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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.258 C 0.242 G 0.242 T 0.258 

MOTIF 1-CTCACTGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 5.5e-002
 0.001361 0.775896 0.221382 0.001361
 0.001361 0.001280 0.111213 0.886147
 0.037966 0.959393 0.001280 0.001361
 0.959475 0.001280 0.037885 0.001361
 0.001361 0.995999 0.001280 0.001361
 0.001361 0.074608 0.001280 0.922752
 0.111294 0.001280 0.886065 0.001361
 0.001361 0.995999 0.001280 0.001361

MOTIF 2-AGGCTGGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 1.7e-001
 0.921891 0.045172 0.009950 0.022987
 0.000824 0.000775 0.995542 0.002859
 0.045222 0.045256 0.908699 0.000824
 0.032138 0.850716 0.094159 0.022987
 0.123907 0.022938 0.000775 0.852381
 0.045222 0.022938 0.908853 0.022987
 0.045222 0.000775 0.952187 0.001816
 0.828682 0.004422 0.112308 0.054588

MOTIF 3-AGCTGGGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 3.0e-001
 0.825921 0.001302 0.075905 0.096872
 0.001385 0.108347 0.888884 0.001385
 0.121061 0.856186 0.001302 0.021451
 0.001385 0.001302 0.001302 0.996012
 0.075988 0.001302 0.884083 0.038627
 0.001385 0.001302 0.995929 0.001385
 0.001385 0.038544 0.921445 0.038627
 0.808596 0.188717 0.001302 0.001385

MOTIF 4-AAATACAR STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 3.5e-001
 0.712538 0.001239 0.001239 0.284984
 0.772462 0.001239 0.001239 0.225060
 0.670315 0.001239 0.001239 0.327207
 0.001318 0.001239 0.001239 0.996204
 0.996204 0.001239 0.001239 0.001318
 0.001318 0.996126 0.001239 0.001318
 0.601793 0.072127 0.036683 0.289397
 0.429067 0.001239 0.568376 0.001318

MOTIF 5-ATCGCTTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.952209 0.001509 0.044677 0.001605
 0.001605 0.001509 0.001509 0.995377
 0.019475 0.629115 0.044677 0.306732
 0.326894 0.001509 0.669992 0.001605
 0.044773 0.908944 0.001509 0.044773
 0.001605 0.087985 0.044677 0.865733
 0.001605 0.001509 0.001509 0.995377
 0.001605 0.001509 0.995281 0.001605

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MCM7.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MCM7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.62 seconds
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