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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.263 C 0.237 G 0.237 T 0.263 

MOTIF 1-AGTAGCTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.5e-002
 0.867441 0.044088 0.086854 0.001617
 0.129917 0.044088 0.824378 0.001617
 0.001617 0.001458 0.001458 0.995467
 0.995467 0.001458 0.001458 0.001617
 0.044246 0.001458 0.952679 0.001617
 0.001617 0.995308 0.001458 0.001617
 0.001617 0.001458 0.001458 0.995467
 0.044246 0.001458 0.952679 0.001617

MOTIF 2-CCAGGCTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 3.0e-001
 0.001307 0.996208 0.001178 0.001307
 0.001307 0.858073 0.035629 0.104992
 0.927435 0.035629 0.035629 0.001307
 0.070319 0.035629 0.892746 0.001307
 0.001307 0.001178 0.996208 0.001307
 0.001307 0.981947 0.001178 0.015568
 0.001307 0.001178 0.001178 0.996336
 0.070319 0.001178 0.927196 0.001307

MOTIF 3-AGGTTCAR STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 5.0e-001
 0.789100 0.001008 0.208774 0.001118
 0.001118 0.001008 0.849092 0.148782
 0.030594 0.001008 0.888227 0.080171
 0.001118 0.001008 0.089721 0.908153
 0.001118 0.001008 0.001008 0.996866
 0.030594 0.866222 0.102066 0.001118
 0.996866 0.001008 0.001008 0.001118
 0.428852 0.001008 0.450834 0.119306

MOTIF 4-ASTGCAST STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.995298 0.001513 0.001513 0.001677
 0.001677 0.409459 0.498323 0.090541
 0.001677 0.045730 0.005741 0.946851
 0.068075 0.001513 0.928736 0.001677
 0.001677 0.928736 0.001513 0.068075
 0.946851 0.005741 0.045730 0.001677
 0.090541 0.498323 0.409459 0.001677
 0.001677 0.001513 0.001513 0.995298

MOTIF 5-ATTCTCCY STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 69 P= 6.4e-001
 0.880193 0.000729 0.000729 0.118348
 0.000809 0.000729 0.133155 0.865307
 0.000809 0.043443 0.000729 0.955019
 0.022131 0.922129 0.054931 0.000809
 0.116384 0.000729 0.052201 0.830686
 0.137638 0.860824 0.000729 0.000809
 0.060580 0.788212 0.150399 0.000809
 0.000809 0.507596 0.000729 0.490866

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MCM5.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MCM5/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.49 seconds
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