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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.254 C 0.246 G 0.246 T 0.254 

MOTIF 1-ATGCAAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 2.4e-001
 0.774171 0.134302 0.001568 0.089959
 0.045715 0.001568 0.045671 0.907046
 0.045715 0.045671 0.907001 0.001613
 0.001613 0.907001 0.045671 0.045715
 0.951148 0.001568 0.001568 0.045715
 0.995250 0.001568 0.001568 0.001613
 0.907046 0.001568 0.045671 0.045715
 0.081851 0.134302 0.090057 0.693790

MOTIF 2-CCCAGGCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 5.0e-001
 0.091440 0.800825 0.070367 0.037368
 0.012951 0.915405 0.023282 0.048363
 0.068178 0.818377 0.025472 0.087973
 0.888240 0.068165 0.000444 0.043150
 0.187110 0.039073 0.693463 0.080354
 0.093246 0.107620 0.701997 0.097137
 0.017993 0.815161 0.078853 0.087993
 0.043231 0.741182 0.025432 0.190155

MOTIF 3-CAGGAGAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 7.6e-001
 0.002490 0.992598 0.002422 0.002490
 0.924572 0.070516 0.002422 0.002490
 0.002490 0.002422 0.787657 0.207431
 0.002490 0.030610 0.964409 0.002490
 0.992666 0.002422 0.002422 0.002490
 0.002490 0.002422 0.992598 0.002490
 0.924572 0.002422 0.002422 0.070584
 0.992666 0.002422 0.002422 0.002490

MOTIF 4-AAACATTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.701330 0.120561 0.057509 0.120601
 0.956053 0.001411 0.001411 0.041125
 0.995727 0.001411 0.001411 0.001451
 0.273239 0.723899 0.001411 0.001451
 0.908791 0.001411 0.080759 0.009039
 0.001451 0.057509 0.001411 0.939629
 0.001451 0.160235 0.041085 0.797229
 0.797229 0.080887 0.080759 0.041125

MOTIF 5-ACTGCACT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.991839 0.002695 0.002695 0.002771
 0.002771 0.915983 0.002695 0.078551
 0.002771 0.002695 0.002695 0.991839
 0.002771 0.002695 0.991762 0.002771
 0.078551 0.840203 0.002695 0.078551
 0.916059 0.002695 0.078474 0.002771
 0.002771 0.764180 0.078474 0.154574
 0.002771 0.002695 0.002695 0.991839

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MCM3.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MCM3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.64 seconds
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