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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.256 C 0.244 G 0.244 T 0.256 

MOTIF 1-ATCTCGGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 1.2e-001
 0.962417 0.035134 0.001193 0.001255
 0.001255 0.001193 0.001193 0.996358
 0.001255 0.996297 0.001193 0.001255
 0.001255 0.001193 0.001193 0.996358
 0.001255 0.859875 0.001193 0.137677
 0.172059 0.035134 0.689401 0.103406
 0.001255 0.001193 0.962356 0.035196
 0.001255 0.962356 0.035134 0.001255

MOTIF 2-AGCTACTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 2.4e-001
 0.996650 0.001098 0.001098 0.001154
 0.001154 0.001098 0.996594 0.001154
 0.001154 0.965374 0.001098 0.032374
 0.001154 0.001098 0.001098 0.996650
 0.996650 0.001098 0.001098 0.001154
 0.032374 0.965374 0.001098 0.001154
 0.001154 0.001098 0.032318 0.965430
 0.001154 0.839483 0.001098 0.158265

MOTIF 3-GAGGCTGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 3.0e-001
 0.001102 0.001048 0.966931 0.030918
 0.937074 0.001048 0.060775 0.001102
 0.001102 0.001048 0.996747 0.001102
 0.001102 0.001048 0.996747 0.001102
 0.001102 0.996747 0.001048 0.001102
 0.001102 0.001048 0.121671 0.876178
 0.001102 0.001048 0.996747 0.001102
 0.996801 0.001048 0.001048 0.001102

MOTIF 4-GTTCAAGY STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 5.0e-001
 0.054358 0.000937 0.890347 0.054358
 0.000985 0.054310 0.000937 0.943768
 0.000985 0.000937 0.000937 0.997141
 0.000985 0.997093 0.000937 0.000985
 0.970455 0.027623 0.000937 0.000985
 0.997141 0.000937 0.000937 0.000985
 0.000985 0.000937 0.970449 0.027629
 0.081174 0.326447 0.135018 0.457361

MOTIF 5-CACTGCAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.023300 0.931245 0.022155 0.023300
 0.932391 0.022155 0.022155 0.023300
 0.023300 0.931245 0.022155 0.023300
 0.023300 0.022155 0.022155 0.932391
 0.023300 0.022155 0.931245 0.023300
 0.023300 0.931245 0.022155 0.023300
 0.932391 0.022155 0.022155 0.023300
 0.932391 0.022155 0.022155 0.023300

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MCM2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MCM2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	3.11 seconds
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