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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.186 C 0.314 G 0.314 T 0.186 

MOTIF 1-SCACGTGS STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 232 P= 3.5e-005
 0.141885 0.518809 0.339130 0.000176
 0.000176 0.999352 0.000296 0.000176
 0.957602 0.000296 0.019658 0.022444
 0.000176 0.940487 0.000296 0.059041
 0.059041 0.000296 0.940487 0.000176
 0.022444 0.019658 0.000296 0.957602
 0.000176 0.000296 0.999352 0.000176
 0.000176 0.339130 0.518809 0.141885

MOTIF 2-CCGCCCTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 1.2e-001
 0.000641 0.969210 0.001081 0.029069
 0.000641 0.923121 0.001081 0.075158
 0.101190 0.001081 0.850242 0.047488
 0.196230 0.802049 0.001081 0.000641
 0.029092 0.913660 0.056608 0.000641
 0.048368 0.902183 0.024944 0.024504
 0.075901 0.131183 0.165358 0.627557
 0.024504 0.949872 0.001081 0.024543

MOTIF 3-CCACCTAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 2.4e-001
 0.058377 0.857268 0.059333 0.025022
 0.058286 0.937619 0.002571 0.001524
 0.856130 0.116277 0.026068 0.001524
 0.058286 0.766784 0.002571 0.172359
 0.001524 0.970884 0.026068 0.001524
 0.001524 0.002571 0.059333 0.936573
 0.993335 0.002571 0.002571 0.001524
 0.001524 0.755214 0.184975 0.058286

MOTIF 4-CCACCTGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.001828 0.993261 0.003083 0.001828
 0.138205 0.828701 0.031266 0.001828
 0.992006 0.003083 0.003083 0.001828
 0.001828 0.993261 0.003083 0.001828
 0.001828 0.993261 0.003083 0.001828
 0.001828 0.003083 0.003083 0.992006
 0.001828 0.207979 0.788365 0.001828
 0.001828 0.003083 0.993261 0.001828

MOTIF 5-CAGGGGGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.016918 0.937627 0.028536 0.016918
 0.926009 0.028536 0.028536 0.016918
 0.016918 0.028536 0.937627 0.016918
 0.016918 0.028536 0.937627 0.016918
 0.016918 0.028536 0.937627 0.016918
 0.016918 0.028536 0.937627 0.016918
 0.016918 0.028536 0.937627 0.016918
 0.016918 0.937627 0.028536 0.016918

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MAX.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MAX/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.78 seconds
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