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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.315 C 0.185 G 0.185 T 0.315 

MOTIF 1-AGTCAGCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 243 P= 3.6e-009
 0.656116 0.079515 0.101315 0.163053
 0.081008 0.114278 0.789024 0.015689
 0.000263 0.000154 0.000154 0.999428
 0.028349 0.964280 0.000154 0.007217
 0.999428 0.000154 0.000154 0.000263
 0.000263 0.000154 0.965529 0.034054
 0.000263 0.999319 0.000154 0.000263
 0.982060 0.000154 0.017522 0.000263

MOTIF 2-AAGTAGGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.781038 0.001881 0.072468 0.144613
 0.993027 0.001881 0.001881 0.003211
 0.003211 0.072468 0.921110 0.003211
 0.003211 0.001881 0.001881 0.993027
 0.851625 0.001881 0.001881 0.144613
 0.003211 0.001881 0.991697 0.003211
 0.144613 0.001881 0.850295 0.003211
 0.709994 0.001881 0.072468 0.215656

MOTIF 3-AGGCAAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 7.6e-001
 0.729687 0.046411 0.001205 0.222698
 0.002056 0.046411 0.949476 0.002056
 0.108017 0.001205 0.888722 0.002056
 0.002056 0.994683 0.001205 0.002056
 0.905122 0.046411 0.046411 0.002056
 0.905122 0.046411 0.001205 0.047263
 0.950328 0.001205 0.046411 0.002056
 0.904976 0.091763 0.001205 0.002056

MOTIF 4-ATCAAACA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.995065 0.001331 0.001331 0.002272
 0.052229 0.001331 0.001331 0.945109
 0.002272 0.994124 0.001331 0.002272
 0.645049 0.301391 0.001331 0.052229
 0.824355 0.022011 0.001331 0.152302
 0.924429 0.022011 0.001331 0.052229
 0.002272 0.793977 0.001331 0.202419
 0.895152 0.001331 0.001331 0.102185

MOTIF 5-CTAAAATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.028664 0.925882 0.016791 0.028664
 0.028664 0.016791 0.016791 0.937755
 0.937755 0.016791 0.016791 0.028664
 0.937755 0.016791 0.016791 0.028664
 0.937755 0.016791 0.016791 0.028664
 0.937755 0.016791 0.016791 0.028664
 0.028664 0.016791 0.016791 0.937755
 0.937755 0.016791 0.016791 0.028664

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MAFK.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MAFK/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	2.33 seconds
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