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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.295 C 0.205 G 0.205 T 0.295 

MOTIF 1-CTGAGTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 162 P= 3.6e-003
 0.137008 0.832325 0.025060 0.005608
 0.000301 0.014406 0.000209 0.985083
 0.007377 0.000209 0.927494 0.064920
 0.938165 0.000209 0.014383 0.047243
 0.066644 0.000209 0.897005 0.036141
 0.000301 0.000209 0.000859 0.998631
 0.008883 0.990606 0.000209 0.000301
 0.995187 0.000209 0.003138 0.001465

MOTIF 2-GCAAGTCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.2e-001
 0.026809 0.018645 0.927736 0.026809
 0.026809 0.927736 0.018645 0.026809
 0.935900 0.018645 0.018645 0.026809
 0.935900 0.018645 0.018645 0.026809
 0.026809 0.018645 0.927736 0.026809
 0.026809 0.018645 0.018645 0.935900
 0.026809 0.927736 0.018645 0.026809
 0.935900 0.018645 0.018645 0.026809

MOTIF 3-AACTGCTR STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 2.4e-001
 0.921148 0.001110 0.001110 0.076632
 0.996184 0.001110 0.001110 0.001596
 0.001596 0.995697 0.001110 0.001596
 0.001596 0.151302 0.001110 0.845992
 0.076874 0.001110 0.920420 0.001596
 0.001596 0.927117 0.016641 0.054645
 0.001596 0.264950 0.001110 0.732344
 0.378594 0.001110 0.523329 0.096967

MOTIF 4-TCTTTAAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 3.3e-001
 0.001315 0.000915 0.000915 0.996855
 0.001315 0.830951 0.085509 0.082225
 0.001315 0.123309 0.000915 0.874461
 0.017973 0.031831 0.000915 0.949281
 0.001315 0.000915 0.031831 0.965939
 0.996855 0.000915 0.000915 0.001315
 0.600620 0.187125 0.031930 0.180324
 0.063247 0.629316 0.031831 0.275607

MOTIF 5-CCTTGTCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.6e-001
 0.121689 0.874755 0.001459 0.002097
 0.002097 0.895589 0.100216 0.002097
 0.002097 0.001459 0.001459 0.994985
 0.085016 0.001459 0.001459 0.912066
 0.051397 0.001459 0.945047 0.002097
 0.101014 0.050758 0.001459 0.846769
 0.051397 0.846290 0.100216 0.002097
 0.797311 0.149833 0.001459 0.051397

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/MAFG.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_MAFG/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	3.32 seconds
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