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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.255 C 0.245 G 0.245 T 0.255 

MOTIF 1-CCCAGCTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 8.2e-004
 0.000977 0.997108 0.000937 0.000977
 0.000977 0.997108 0.000937 0.000977
 0.000977 0.970566 0.000937 0.027519
 0.779888 0.000937 0.218198 0.000977
 0.027519 0.000937 0.970566 0.000977
 0.000977 0.970566 0.000937 0.027519
 0.000977 0.000937 0.000937 0.997148
 0.997148 0.000937 0.000937 0.000977

MOTIF 2-CTTGAACC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 4.8e-003
 0.001192 0.996473 0.001143 0.001192
 0.001192 0.001143 0.001143 0.996522
 0.033563 0.164046 0.001143 0.801248
 0.001192 0.001143 0.996473 0.001192
 0.996522 0.001143 0.001143 0.001192
 0.996522 0.001143 0.001143 0.001192
 0.001192 0.996473 0.001143 0.001192
 0.001192 0.703774 0.001143 0.293891

MOTIF 3-CTGAGGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 1.2e-002
 0.001006 0.997023 0.000965 0.001006
 0.001006 0.128902 0.000965 0.869127
 0.001006 0.000965 0.997023 0.001006
 0.997064 0.000965 0.000965 0.001006
 0.083027 0.028291 0.778111 0.110572
 0.001006 0.000965 0.832718 0.165311
 0.001006 0.915002 0.000965 0.083027
 0.896453 0.000965 0.101576 0.001006

MOTIF 4-TCTACTAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 4.9e-002
 0.001022 0.000981 0.000981 0.997017
 0.056640 0.913594 0.000981 0.028786
 0.001022 0.028745 0.000981 0.969253
 0.997017 0.000981 0.000981 0.001022
 0.084583 0.913414 0.000981 0.001022
 0.056640 0.000981 0.000981 0.941399
 0.913635 0.028745 0.000981 0.056640
 0.997017 0.000981 0.000981 0.001022

MOTIF 5-AGTGAGCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 1.2e-001
 0.869212 0.128897 0.000926 0.000965
 0.053489 0.005941 0.939605 0.000965
 0.000965 0.000926 0.000926 0.997183
 0.000965 0.000926 0.944620 0.053489
 0.997183 0.000926 0.000926 0.000965
 0.027185 0.027145 0.865793 0.079877
 0.000965 0.970924 0.000926 0.027185
 0.000965 0.854128 0.011780 0.133126

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/LARP7.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_LARP7/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n09.farnam.hpc.yale.internal
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FINALTIME:	1.36 seconds
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