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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.227 C 0.273 G 0.273 T 0.227 

MOTIF 1-AACCGGTT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 70 P= 3.3e-001
 0.756713 0.000809 0.031709 0.210769
 0.676955 0.000809 0.290731 0.031505
 0.000672 0.997847 0.000809 0.000672
 0.000672 0.752522 0.000809 0.245997
 0.245997 0.000809 0.752522 0.000672
 0.000672 0.000809 0.997847 0.000672
 0.031505 0.290731 0.000809 0.676955
 0.210769 0.031709 0.000809 0.756713

MOTIF 2-AGATAAGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 69 P= 3.6e-001
 0.911079 0.000816 0.000816 0.087289
 0.000677 0.000816 0.997829 0.000677
 0.971410 0.021519 0.000816 0.006255
 0.000677 0.063125 0.000816 0.935381
 0.933379 0.000816 0.063226 0.002578
 0.976988 0.000816 0.021519 0.000677
 0.069779 0.000816 0.824542 0.104863
 0.189751 0.166401 0.622468 0.021380

MOTIF 3-CCCCTCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 8.8e-001
 0.012496 0.966932 0.001231 0.019340
 0.081131 0.900993 0.016853 0.001022
 0.032266 0.930446 0.036265 0.001022
 0.032266 0.949858 0.001231 0.016644
 0.001022 0.001231 0.252541 0.745205
 0.001022 0.984114 0.001231 0.013632
 0.032266 0.745147 0.063820 0.158767
 0.001022 0.993885 0.004070 0.001022

MOTIF 4-CCATTTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.081300 0.835954 0.041507 0.041239
 0.001307 0.955880 0.041507 0.001307
 0.995546 0.001574 0.001574 0.001307
 0.001307 0.001574 0.001574 0.995546
 0.041239 0.001574 0.162079 0.795108
 0.001307 0.001574 0.041507 0.955613
 0.081300 0.819294 0.018105 0.081300
 0.778492 0.098444 0.001574 0.121491

MOTIF 5-AAACTGGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.0e+000
 0.922649 0.001662 0.074309 0.001380
 0.677585 0.001662 0.319374 0.001380
 0.867989 0.001662 0.128969 0.001380
 0.001380 0.995579 0.001662 0.001380
 0.001380 0.001662 0.001662 0.995297
 0.043610 0.001662 0.953348 0.001380
 0.001380 0.001662 0.995579 0.001380
 0.180370 0.001662 0.001662 0.816306

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/KLF16.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_KLF16/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n10.farnam.hpc.yale.internal
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FINALTIME:	2.93 seconds
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