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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.185 C 0.315 G 0.315 T 0.185 

MOTIF 1-ACGCCCMC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 221 P= 1.2e-006
 0.794297 0.205159 0.000343 0.000202
 0.000202 0.999253 0.000343 0.000202
 0.151456 0.000343 0.848000 0.000202
 0.000202 0.999253 0.000343 0.000202
 0.000202 0.999253 0.000343 0.000202
 0.000202 0.966820 0.000343 0.032636
 0.601738 0.387960 0.000343 0.009959
 0.000202 0.894471 0.000343 0.104984

MOTIF 2-AGRGGGCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 6.7e-001
 0.996853 0.001215 0.001215 0.000716
 0.000716 0.001215 0.970575 0.027494
 0.377681 0.001215 0.620387 0.000716
 0.000716 0.001215 0.858696 0.139373
 0.000716 0.035819 0.935971 0.027494
 0.000716 0.058888 0.886125 0.054271
 0.000716 0.997352 0.001215 0.000716
 0.270578 0.001215 0.727490 0.000716

MOTIF 3-AGATGGAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 8.8e-001
 0.921153 0.073757 0.003202 0.001887
 0.001887 0.073757 0.922468 0.001887
 0.991708 0.003202 0.003202 0.001887
 0.001887 0.003202 0.003202 0.991708
 0.001887 0.073757 0.922468 0.001887
 0.143224 0.003202 0.710349 0.143224
 0.991708 0.003202 0.003202 0.001887
 0.143224 0.073757 0.781131 0.001887

MOTIF 4-GATTACAS STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.001377 0.002337 0.943429 0.052857
 0.921159 0.002337 0.023648 0.052857
 0.001377 0.053817 0.053817 0.890990
 0.001377 0.053817 0.105297 0.839510
 0.848202 0.023648 0.126773 0.001377
 0.001377 0.819158 0.002337 0.177128
 0.890824 0.002337 0.105462 0.001377
 0.052857 0.426630 0.364530 0.155983

MOTIF 5-AAAACTTR STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.914602 0.001830 0.082489 0.001079
 0.753090 0.163277 0.001830 0.081802
 0.914537 0.001830 0.001830 0.081802
 0.874143 0.122948 0.001830 0.001079
 0.017774 0.898529 0.082619 0.001079
 0.001079 0.001830 0.001830 0.995260
 0.001079 0.001830 0.163538 0.833553
 0.300208 0.122948 0.446167 0.130677

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/KLF13.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_KLF13/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.63 seconds
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