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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.213 C 0.287 G 0.287 T 0.213 

MOTIF 1-CCCCGCCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 172 P= 4.4e-002
 0.029253 0.890440 0.007369 0.072938
 0.108819 0.860083 0.003498 0.027600
 0.274837 0.687723 0.005390 0.032050
 0.000442 0.962924 0.004470 0.032164
 0.110530 0.000596 0.862205 0.026669
 0.014871 0.961871 0.000596 0.022663
 0.002345 0.982600 0.008659 0.006396
 0.000442 0.991395 0.006400 0.001763

MOTIF 2-AGATAAGR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 2.1e-001
 0.648044 0.109940 0.000903 0.241113
 0.000670 0.000903 0.997757 0.000670
 0.953909 0.000903 0.044518 0.000670
 0.000670 0.000903 0.000903 0.997524
 0.997524 0.000903 0.000903 0.000670
 0.801117 0.131852 0.066360 0.000670
 0.000670 0.175572 0.713945 0.109812
 0.481205 0.176068 0.254828 0.087900

MOTIF 3-GTGACTCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 3.0e-001
 0.099227 0.067011 0.800087 0.033675
 0.099333 0.099365 0.034024 0.767279
 0.001004 0.047548 0.950444 0.001004
 0.903512 0.001353 0.080606 0.014529
 0.001004 0.960006 0.037986 0.001004
 0.099333 0.034024 0.034024 0.832620
 0.066451 0.898522 0.034024 0.001004
 0.865555 0.034076 0.099365 0.001004

MOTIF 4-GATTACAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 7.6e-001
 0.065437 0.002629 0.929983 0.001951
 0.865615 0.002629 0.002629 0.129128
 0.001951 0.002629 0.002629 0.992792
 0.001951 0.066115 0.002629 0.929305
 0.865615 0.002629 0.002629 0.129128
 0.001951 0.802806 0.129806 0.065437
 0.966510 0.028910 0.002629 0.001951
 0.663709 0.066115 0.268225 0.001951

MOTIF 5-AAGAGGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 7.6e-001
 0.886257 0.002225 0.002225 0.109294
 0.886430 0.055960 0.002225 0.055386
 0.001651 0.002225 0.886830 0.109294
 0.940164 0.002225 0.002225 0.055386
 0.163375 0.109694 0.725279 0.001651
 0.001651 0.024469 0.972228 0.001651
 0.993899 0.002225 0.002225 0.001651
 0.886257 0.002225 0.002225 0.109294

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/KLF1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_KLF1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n03.farnam.hpc.yale.internal
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FINALTIME:	1.67 seconds
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