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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.272 C 0.229 G 0.229 T 0.272 

MOTIF 1-TGACGTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 1.2e-001
 0.024682 0.020773 0.020773 0.933773
 0.024682 0.020773 0.929864 0.024682
 0.933773 0.020773 0.020773 0.024682
 0.024682 0.929864 0.020773 0.024682
 0.024682 0.020773 0.929864 0.024682
 0.024682 0.020773 0.020773 0.933773
 0.024682 0.929864 0.020773 0.024682
 0.933773 0.020773 0.020773 0.024682

MOTIF 2-TGAYRTCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 5.0e-001
 0.001157 0.196928 0.000974 0.800942
 0.001157 0.000974 0.996713 0.001157
 0.996896 0.000974 0.000974 0.001157
 0.071866 0.460375 0.066149 0.401610
 0.401610 0.066149 0.460375 0.071866
 0.001157 0.000974 0.000974 0.996896
 0.001157 0.996713 0.000974 0.001157
 0.800942 0.000974 0.196928 0.001157

MOTIF 3-STATTTTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 7.6e-001
 0.001899 0.653765 0.342436 0.001899
 0.001899 0.001598 0.050088 0.946414
 0.994904 0.001598 0.001598 0.001899
 0.001899 0.001598 0.001598 0.994904
 0.001899 0.050088 0.050088 0.897924
 0.001899 0.021672 0.001598 0.974831
 0.099035 0.001598 0.196027 0.703340
 0.050389 0.897623 0.050088 0.001899

MOTIF 4-CCCGCCCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.002619 0.992557 0.002204 0.002619
 0.002619 0.992557 0.002204 0.002619
 0.002619 0.992557 0.002204 0.002619
 0.002619 0.002204 0.992557 0.002619
 0.030302 0.964874 0.002204 0.002619
 0.002619 0.992557 0.002204 0.002619
 0.002619 0.925685 0.069076 0.002619
 0.002619 0.723773 0.270989 0.002619

MOTIF 5-CAGCCTGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 8.8e-001
 0.042859 0.871614 0.042669 0.042859
 0.954422 0.001360 0.042603 0.001615
 0.001615 0.083979 0.912790 0.001615
 0.001615 0.995409 0.001360 0.001615
 0.084234 0.830172 0.001360 0.084234
 0.001615 0.001360 0.001360 0.995665
 0.001615 0.042603 0.954166 0.001615
 0.167388 0.001360 0.747018 0.084234

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/KHSRP.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_KHSRP/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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