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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.175 C 0.325 G 0.325 T 0.175 

MOTIF 1-GGCCGCGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 73 P= 5.0e-001
 0.000800 0.026328 0.972072 0.000800
 0.002376 0.001482 0.936025 0.060117
 0.077537 0.780916 0.077789 0.063759
 0.000800 0.869381 0.129019 0.000800
 0.127946 0.052430 0.761726 0.057898
 0.007904 0.820418 0.166692 0.004986
 0.000800 0.115858 0.882542 0.000800
 0.009255 0.001482 0.988463 0.000800

MOTIF 2-AACCCAGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 5.0e-001
 0.898131 0.002249 0.002249 0.097372
 0.810168 0.105633 0.002249 0.081950
 0.049216 0.947322 0.002249 0.001214
 0.049216 0.803163 0.050250 0.097372
 0.097372 0.851164 0.050250 0.001214
 0.850130 0.098406 0.050250 0.001214
 0.001214 0.002249 0.995323 0.001214
 0.117657 0.830879 0.050250 0.001214

MOTIF 3-CCGCAGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 6.7e-001
 0.001055 0.975079 0.001954 0.021912
 0.001055 0.810294 0.187596 0.001055
 0.001055 0.159488 0.838402 0.001055
 0.023531 0.973460 0.001954 0.001055
 0.995037 0.001954 0.001954 0.001055
 0.023531 0.127501 0.847913 0.001055
 0.049391 0.947600 0.001954 0.001055
 0.001055 0.934794 0.063096 0.001055

MOTIF 4-KAMATKTM STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 82 P= 8.1e-001
 0.077883 0.130376 0.370185 0.421556
 0.770526 0.091748 0.055713 0.082014
 0.472587 0.398485 0.089709 0.039219
 0.818800 0.061372 0.078443 0.041384
 0.041384 0.078443 0.061372 0.818800
 0.039219 0.089709 0.398485 0.472587
 0.082014 0.055713 0.091748 0.770526
 0.421556 0.370185 0.130376 0.077883

MOTIF 5-CCGACTCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.0e+000
 0.045372 0.895260 0.013995 0.045372
 0.001119 0.995689 0.002073 0.001119
 0.045444 0.135261 0.773923 0.045372
 0.994735 0.002073 0.002073 0.001119
 0.001119 0.951435 0.002073 0.045372
 0.089768 0.020392 0.002073 0.887766
 0.001119 0.951435 0.002073 0.045372
 0.089768 0.256469 0.090722 0.563041

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/KDM5B.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_KDM5B/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n09.farnam.hpc.yale.internal
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FINALTIME:	1.57 seconds
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