********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.169 C 0.331 G 0.331 T 0.169 

MOTIF 1-AGGAAGTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 2.3e-001
 0.762740 0.235152 0.001394 0.000714
 0.000714 0.001394 0.997178 0.000714
 0.006304 0.030621 0.962361 0.000714
 0.933549 0.064342 0.001394 0.000714
 0.937950 0.059942 0.001394 0.000714
 0.059451 0.001394 0.879894 0.059261
 0.000714 0.030621 0.001394 0.967271
 0.000714 0.046549 0.834550 0.118187

MOTIF 2-MSGAGGCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 5.0e-001
 0.407779 0.462370 0.001520 0.128331
 0.136064 0.507100 0.356058 0.000778
 0.000778 0.001520 0.996923 0.000778
 0.766638 0.001520 0.001520 0.230322
 0.000778 0.001520 0.996923 0.000778
 0.077694 0.001520 0.920008 0.000778
 0.000778 0.897368 0.001520 0.100333
 0.000778 0.001520 0.869370 0.128331

MOTIF 3-CCTGGTCT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 6.7e-001
 0.000941 0.957737 0.001839 0.039483
 0.000941 0.919195 0.040380 0.039483
 0.039483 0.066664 0.001839 0.892015
 0.000941 0.001839 0.957737 0.039483
 0.008313 0.084849 0.898525 0.008313
 0.155855 0.100658 0.079390 0.664097
 0.000941 0.941782 0.017794 0.039483
 0.039483 0.100921 0.040380 0.819215

MOTIF 4-CCTCCCCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 115 P= 8.1e-001
 0.012098 0.975936 0.011119 0.000847
 0.028606 0.963737 0.006810 0.000847
 0.000847 0.001655 0.143836 0.853661
 0.105278 0.844731 0.049144 0.000847
 0.035377 0.911262 0.052514 0.000847
 0.055420 0.928151 0.015582 0.000847
 0.089452 0.828161 0.081540 0.000847
 0.074083 0.891507 0.033563 0.000847

MOTIF 5-ACGGGGCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.990929 0.003611 0.003611 0.001849
 0.001849 0.992692 0.003611 0.001849
 0.001849 0.003611 0.992692 0.001849
 0.016326 0.003611 0.750416 0.229648
 0.001849 0.155233 0.809737 0.033181
 0.033181 0.003611 0.961359 0.001849
 0.001849 0.992692 0.003611 0.001849
 0.001849 0.841070 0.155233 0.001849

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/KDM4B.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_KDM4B/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n08.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	3.50 seconds
********************************************************************************