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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.27 C 0.23 G 0.23 T 0.27 

MOTIF 1-AATCWCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 169 P= 4.5e-004
 0.998966 0.000325 0.000325 0.000383
 0.998966 0.000325 0.000325 0.000383
 0.000383 0.037247 0.000325 0.962045
 0.000383 0.998909 0.000325 0.000383
 0.313731 0.154024 0.000325 0.531920
 0.102218 0.897074 0.000325 0.000383
 0.761446 0.000325 0.047517 0.190712
 0.000383 0.000325 0.998909 0.000383

MOTIF 2-AAATCAGT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 70 P= 2.5e-001
 0.956443 0.007191 0.035557 0.000808
 0.997817 0.000687 0.000687 0.000808
 0.933584 0.021419 0.042285 0.002712
 0.035679 0.000687 0.063286 0.900348
 0.000808 0.968381 0.021419 0.009391
 0.836594 0.042151 0.042151 0.079103
 0.004774 0.087420 0.875095 0.032711
 0.202870 0.021604 0.038656 0.736871

MOTIF 3-GCCTCCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 5.0e-001
 0.001268 0.001077 0.996387 0.001268
 0.001268 0.996387 0.001077 0.001268
 0.001268 0.931266 0.001077 0.066389
 0.001268 0.001077 0.033586 0.964070
 0.001268 0.996387 0.001077 0.001268
 0.001268 0.996387 0.001077 0.001268
 0.001268 0.898548 0.001077 0.099107
 0.832984 0.001077 0.164671 0.001268

MOTIF 4-AGGCATGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 6.5e-001
 0.926945 0.000778 0.024255 0.048021
 0.024393 0.000778 0.973914 0.000916
 0.024393 0.024255 0.910949 0.040403
 0.047946 0.945870 0.005268 0.000916
 0.875967 0.000778 0.115365 0.007890
 0.000916 0.024255 0.160574 0.814255
 0.024393 0.118925 0.808737 0.047946
 0.924807 0.040265 0.024293 0.010634

MOTIF 5-CTCACTGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 7.0e-001
 0.001495 0.763811 0.233198 0.001495
 0.001495 0.001271 0.001271 0.995963
 0.039839 0.880461 0.001271 0.078429
 0.957620 0.001271 0.039614 0.001495
 0.008829 0.988405 0.001271 0.001495
 0.001495 0.078081 0.001271 0.919153
 0.039839 0.001271 0.957395 0.001495
 0.001495 0.995739 0.001271 0.001495

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/KDM1A.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_KDM1A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n09.farnam.hpc.yale.internal
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FINALTIME:	1.45 seconds
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