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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.246 C 0.254 G 0.254 T 0.246 

MOTIF 1-ATGACTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 235 P= 5.7e-009
 0.932618 0.000159 0.067069 0.000154
 0.000154 0.000159 0.000159 0.999528
 0.000154 0.001566 0.998126 0.000154
 0.999130 0.000159 0.000159 0.000552
 0.000868 0.856056 0.142922 0.000154
 0.001830 0.000159 0.000159 0.997852
 0.003047 0.996640 0.000159 0.000154
 0.999171 0.000159 0.000159 0.000511

MOTIF 2-GCCTCCCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 2.1e-001
 0.106296 0.001583 0.730170 0.161952
 0.024802 0.920567 0.044839 0.009793
 0.001533 0.922715 0.001583 0.074170
 0.044719 0.019460 0.001583 0.934238
 0.001533 0.849516 0.131560 0.017392
 0.001533 0.995352 0.001583 0.001533
 0.131510 0.822188 0.001583 0.044719
 0.880155 0.068305 0.001583 0.049958

MOTIF 3-NTTATCTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.6e-001
 0.285314 0.332489 0.191126 0.191071
 0.001672 0.001727 0.001727 0.994874
 0.001672 0.001727 0.001727 0.994874
 0.994874 0.001727 0.001727 0.001672
 0.001672 0.001727 0.001727 0.994874
 0.001672 0.994929 0.001727 0.001672
 0.001672 0.001727 0.143091 0.853510
 0.143036 0.001727 0.001727 0.853510

MOTIF 4-CCACCCCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 8.8e-001
 0.127715 0.838516 0.032651 0.001118
 0.001118 0.901917 0.032651 0.064314
 0.965026 0.001154 0.032702 0.001118
 0.095913 0.838619 0.001154 0.064314
 0.014293 0.920340 0.064249 0.001118
 0.022116 0.900771 0.032702 0.044412
 0.085826 0.845888 0.014193 0.054094
 0.001118 0.888544 0.045690 0.064649

MOTIF 5-CCAGAAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 9.9e-001
 0.031620 0.905005 0.062291 0.001084
 0.062255 0.874468 0.031656 0.031620
 0.996678 0.001119 0.001119 0.001084
 0.031620 0.031656 0.905103 0.031620
 0.874335 0.062291 0.062291 0.001084
 0.945317 0.052480 0.001119 0.001084
 0.892132 0.093024 0.013760 0.001084
 0.676803 0.099249 0.185826 0.038122

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/JUND.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_JUND/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n01.farnam.hpc.yale.internal
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FINALTIME:	1.42 seconds
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