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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.284 C 0.215 G 0.215 T 0.284 

MOTIF 1-ATGAGTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 212 P= 3.6e-009
 0.750010 0.000172 0.244345 0.005473
 0.000227 0.005698 0.000172 0.993904
 0.000227 0.000172 0.960510 0.039091
 0.997142 0.002459 0.000172 0.000227
 0.000227 0.117498 0.862080 0.020195
 0.000227 0.000172 0.000172 0.999430
 0.005779 0.993822 0.000172 0.000227
 0.999430 0.000172 0.000172 0.000227

MOTIF 2-AGATAAMA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.7e-001
 0.884200 0.068810 0.046059 0.000931
 0.005268 0.010093 0.983708 0.000931
 0.929386 0.005042 0.064640 0.000931
 0.000931 0.000705 0.000705 0.997659
 0.920057 0.000705 0.000705 0.078533
 0.773837 0.213057 0.002787 0.010318
 0.521968 0.331844 0.064362 0.081826
 0.644291 0.213397 0.037229 0.105083

MOTIF 3-AKAACCTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 5.0e-001
 0.993995 0.001809 0.001809 0.002388
 0.002388 0.118158 0.585629 0.293825
 0.993995 0.001809 0.001809 0.002388
 0.993995 0.001809 0.001809 0.002388
 0.002388 0.993416 0.001809 0.002388
 0.002388 0.993416 0.001809 0.002388
 0.002388 0.118158 0.059984 0.819470
 0.293449 0.001809 0.644179 0.060563

MOTIF 4-GACAWCAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 5.0e-001
 0.038854 0.016611 0.943003 0.001532
 0.996147 0.001160 0.001160 0.001532
 0.024126 0.861095 0.075925 0.038854
 0.921383 0.075925 0.001160 0.001532
 0.541541 0.001160 0.038483 0.418816
 0.001532 0.995776 0.001160 0.001532
 0.980697 0.001160 0.001160 0.016982
 0.151545 0.001160 0.001160 0.846135

MOTIF 5-CCCAAASC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 9.7e-001
 0.000917 0.997471 0.000695 0.000917
 0.090530 0.907858 0.000695 0.000917
 0.000917 0.895599 0.000695 0.102789
 0.682404 0.293634 0.000695 0.023266
 0.928127 0.070261 0.000695 0.000917
 0.813245 0.158519 0.027319 0.000917
 0.023266 0.497927 0.401590 0.077216
 0.090386 0.746996 0.000695 0.161924

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/JUN.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_JUN/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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