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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.289 C 0.211 G 0.211 T 0.289 

MOTIF 1-TTGCGCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 232 P= 1.8e-007
 0.000231 0.000169 0.000169 0.999432
 0.000231 0.000169 0.078779 0.920822
 0.171250 0.000169 0.812444 0.016138
 0.008952 0.861026 0.000727 0.129295
 0.129295 0.000727 0.861026 0.008952
 0.016138 0.812444 0.000169 0.171250
 0.920822 0.078779 0.000169 0.000231
 0.999432 0.000169 0.000169 0.000231

MOTIF 2-TCRCCCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 2.5e-002
 0.035792 0.001046 0.001046 0.962115
 0.015656 0.635979 0.035406 0.312959
 0.276648 0.208431 0.513488 0.001432
 0.001432 0.996089 0.001046 0.001432
 0.001432 0.996089 0.001046 0.001432
 0.001432 0.981866 0.001046 0.015656
 0.996475 0.001046 0.001046 0.001432
 0.139093 0.001046 0.858429 0.001432

MOTIF 3-AGGCAGAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 68 P= 3.7e-002
 0.998056 0.000577 0.000577 0.000790
 0.000790 0.000577 0.997843 0.000790
 0.176822 0.022539 0.799849 0.000790
 0.049515 0.892197 0.000577 0.057711
 0.609737 0.057498 0.210916 0.121848
 0.103770 0.019531 0.875910 0.000790
 0.998056 0.000577 0.000577 0.000790
 0.038880 0.019531 0.883817 0.057772

MOTIF 4-GGCTCACK STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 4.9e-002
 0.031722 0.000927 0.966081 0.001269
 0.001269 0.031380 0.966081 0.001269
 0.031722 0.843680 0.000927 0.123670
 0.001269 0.000927 0.000927 0.996876
 0.001269 0.996534 0.000927 0.001269
 0.966423 0.031380 0.000927 0.001269
 0.154519 0.809138 0.000927 0.035416
 0.052489 0.013534 0.493538 0.440439

MOTIF 5-ACTCCAGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 1.2e-001
 0.996842 0.000938 0.000938 0.001283
 0.001283 0.965714 0.000938 0.032066
 0.032066 0.000938 0.000938 0.966059
 0.032066 0.965714 0.000938 0.001283
 0.001283 0.904049 0.031720 0.062948
 0.996842 0.000938 0.000938 0.001283
 0.001283 0.000938 0.809996 0.187783
 0.001283 0.996496 0.000938 0.001283

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/IRF9.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_IRF9/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n07.farnam.hpc.yale.internal
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FINALTIME:	2.05 seconds
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