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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.286 C 0.214 G 0.214 T 0.286 

MOTIF 1-GCTAAGAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.2e-001
 0.077309 0.076790 0.806527 0.039375
 0.017215 0.926592 0.038978 0.017215
 0.001562 0.001165 0.038978 0.958295
 0.714587 0.001165 0.190960 0.093288
 0.996107 0.001165 0.001165 0.001562
 0.039375 0.076911 0.806405 0.077309
 0.882549 0.038978 0.001165 0.077309
 0.001562 0.844095 0.114968 0.039375

MOTIF 2-ATGGAGTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 1.7e-001
 0.967288 0.000914 0.000914 0.030885
 0.001225 0.149496 0.054875 0.794404
 0.001225 0.000914 0.996635 0.001225
 0.060639 0.030573 0.907563 0.001225
 0.937628 0.000914 0.000914 0.060544
 0.120874 0.000914 0.847327 0.030885
 0.060639 0.000914 0.000914 0.937533
 0.030885 0.740549 0.000914 0.227652

MOTIF 3-CTATTCAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.036363 0.778708 0.007755 0.177174
 0.036363 0.035996 0.001076 0.926565
 0.961485 0.001076 0.035996 0.001443
 0.106541 0.106174 0.035996 0.751290
 0.001443 0.001076 0.001076 0.996405
 0.036363 0.926198 0.035996 0.001443
 0.891307 0.106174 0.001076 0.001443
 0.954806 0.001076 0.007755 0.036363

MOTIF 4-AGCTGGGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 7.6e-001
 0.767314 0.029594 0.033076 0.170016
 0.144823 0.029594 0.824397 0.001186
 0.064095 0.905125 0.029594 0.001186
 0.087405 0.144521 0.000885 0.767189
 0.001186 0.029594 0.968034 0.001186
 0.001186 0.041478 0.898639 0.058696
 0.001186 0.000885 0.910339 0.087590
 0.696396 0.087289 0.000885 0.215430

MOTIF 5-CCTGTAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.026036 0.928509 0.019418 0.026036
 0.026036 0.928509 0.019418 0.026036
 0.026036 0.019418 0.019418 0.935127
 0.026036 0.019418 0.928509 0.026036
 0.026036 0.019418 0.019418 0.935127
 0.935127 0.019418 0.019418 0.026036
 0.935127 0.019418 0.019418 0.026036
 0.935127 0.019418 0.019418 0.026036

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ILK.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ILK/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.69 seconds
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