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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.273 C 0.227 G 0.227 T 0.273 

MOTIF 1-AGGCTGAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 2.1e-001
 0.961267 0.036205 0.001149 0.001380
 0.001380 0.001149 0.996091 0.001380
 0.001380 0.001149 0.996091 0.001380
 0.001380 0.996091 0.001149 0.001380
 0.001380 0.177109 0.001149 0.820363
 0.142284 0.001149 0.749680 0.106887
 0.996323 0.001149 0.001149 0.001380
 0.177340 0.036205 0.785075 0.001380

MOTIF 2-ATCCCAGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 2.4e-001
 0.923605 0.000898 0.074417 0.001079
 0.028492 0.083268 0.000898 0.887342
 0.028492 0.969531 0.000898 0.001079
 0.129644 0.868378 0.000898 0.001079
 0.001079 0.813420 0.000898 0.184602
 0.914798 0.000898 0.055812 0.028492
 0.001079 0.047005 0.786008 0.165908
 0.001079 0.996943 0.000898 0.001079

MOTIF 3-GGAGTKCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 7.6e-001
 0.001985 0.001652 0.994378 0.001985
 0.052400 0.001652 0.943963 0.001985
 0.893800 0.052148 0.001652 0.052400
 0.102977 0.001652 0.893386 0.001985
 0.001985 0.001652 0.001652 0.994712
 0.102977 0.001652 0.588441 0.306930
 0.001985 0.994378 0.001652 0.001985
 0.994712 0.001652 0.001652 0.001985

MOTIF 4-ATGCAGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.6e-001
 0.942020 0.001719 0.001719 0.054542
 0.002066 0.106839 0.001719 0.889376
 0.023789 0.001719 0.972426 0.002066
 0.107186 0.836553 0.001719 0.054542
 0.959512 0.001719 0.001719 0.037050
 0.023789 0.001719 0.962389 0.012103
 0.837069 0.054195 0.054195 0.054542
 0.170696 0.054195 0.667923 0.107186

MOTIF 5-GTGGCTCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 8.8e-001
 0.036898 0.001163 0.746507 0.215432
 0.001398 0.001163 0.001163 0.996276
 0.001398 0.001163 0.996042 0.001398
 0.072512 0.001163 0.818083 0.108241
 0.019148 0.704779 0.060872 0.215201
 0.061107 0.001163 0.036663 0.901067
 0.019148 0.978291 0.001163 0.001398
 0.996276 0.001163 0.001163 0.001398

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ILF3.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ILF3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n02.farnam.hpc.yale.internal
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FINALTIME:	2.20 seconds
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