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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.266 C 0.234 G 0.234 T 0.266 

MOTIF 1-GACCTTTV STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 145 P= 1.8e-003
 0.000314 0.000277 0.999095 0.000314
 0.999133 0.000277 0.000277 0.000314
 0.000314 0.999095 0.000277 0.000314
 0.073306 0.926103 0.000277 0.000314
 0.000314 0.000277 0.000277 0.999133
 0.000314 0.000277 0.000277 0.999133
 0.000314 0.000277 0.000277 0.999133
 0.334660 0.302082 0.204853 0.158406

MOTIF 2-CTTATCTC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 6.9e-002
 0.028114 0.643798 0.190793 0.137294
 0.028158 0.046454 0.027990 0.897398
 0.055277 0.027990 0.000914 0.915818
 0.970057 0.000914 0.027990 0.001039
 0.001039 0.055240 0.027990 0.915731
 0.001039 0.997008 0.000914 0.001039
 0.001039 0.000914 0.055066 0.942981
 0.082353 0.780792 0.000914 0.135941

MOTIF 3-CCTCCCAM STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 7.9e-001
 0.000956 0.891689 0.000841 0.106513
 0.000956 0.834005 0.000841 0.164197
 0.000956 0.000841 0.000841 0.997361
 0.135970 0.862233 0.000841 0.000956
 0.000956 0.997247 0.000841 0.000956
 0.000956 0.922459 0.050673 0.025912
 0.716914 0.206541 0.075589 0.000956
 0.330724 0.609077 0.000841 0.059357

MOTIF 4-AGATGGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.846123 0.148606 0.002468 0.002803
 0.002803 0.002468 0.991926 0.002803
 0.992261 0.002468 0.002468 0.002803
 0.002803 0.075537 0.002468 0.919192
 0.075872 0.002468 0.918857 0.002803
 0.002803 0.002468 0.961678 0.033051
 0.846005 0.148724 0.002468 0.002803
 0.002803 0.002468 0.991926 0.002803

MOTIF 5-ACCCAGCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.0e+000
 0.914483 0.001615 0.082067 0.001835
 0.057260 0.939290 0.001615 0.001835
 0.194091 0.722007 0.001615 0.082286
 0.049667 0.946882 0.001615 0.001835
 0.947102 0.001615 0.049448 0.001835
 0.049667 0.001615 0.946882 0.001835
 0.001835 0.946882 0.001615 0.049667
 0.001835 0.155324 0.001615 0.841225

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ID3.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ID3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n09.farnam.hpc.yale.internal
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FINALTIME:	1.52 seconds
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