********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.19 C 0.31 G 0.31 T 0.19 

MOTIF 1-TTGCGCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 157 P= 2.9e-001
 0.000359 0.217550 0.072279 0.709812
 0.062135 0.000584 0.131671 0.805610
 0.294589 0.000584 0.704469 0.000359
 0.042330 0.927853 0.013648 0.016169
 0.016169 0.013648 0.927853 0.042330
 0.000359 0.704469 0.000584 0.294589
 0.805610 0.131671 0.000584 0.062135
 0.709812 0.072279 0.217550 0.000359

MOTIF 2-CAGCAGCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 8.8e-001
 0.001993 0.992772 0.003243 0.001993
 0.991521 0.003243 0.003243 0.001993
 0.001993 0.306888 0.616545 0.074574
 0.001993 0.992772 0.003243 0.001993
 0.991521 0.003243 0.003243 0.001993
 0.001993 0.003243 0.992772 0.001993
 0.001993 0.992772 0.003243 0.001993
 0.001993 0.003243 0.992772 0.001993

MOTIF 3-CCGCAGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 9.1e-001
 0.012991 0.869674 0.001100 0.116234
 0.022812 0.886495 0.090017 0.000676
 0.000676 0.025771 0.956904 0.016649
 0.038730 0.876101 0.021809 0.063361
 0.919482 0.055006 0.024836 0.000676
 0.000676 0.001100 0.972877 0.025346
 0.020381 0.765320 0.185083 0.029217
 0.032505 0.877356 0.001100 0.089038

MOTIF 4-CTATTCAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.062629 0.846786 0.027957 0.062629
 0.001673 0.002723 0.002723 0.992880
 0.992880 0.002723 0.002723 0.001673
 0.001673 0.124830 0.027957 0.845540
 0.026907 0.002723 0.063679 0.906691
 0.123780 0.871823 0.002723 0.001673
 0.931924 0.002723 0.002723 0.062629
 0.123780 0.749913 0.063679 0.062629

MOTIF 5-ACCTGGCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.993299 0.002563 0.002563 0.001575
 0.058943 0.936919 0.002563 0.001575
 0.025323 0.798250 0.059931 0.116495
 0.001575 0.233147 0.002563 0.762715
 0.001575 0.002563 0.994287 0.001575
 0.001575 0.026312 0.913171 0.058943
 0.116495 0.855618 0.026312 0.001575
 0.001575 0.002563 0.059931 0.935931

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/HNRNPLL.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_HNRNPLL/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c22n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.57 seconds
********************************************************************************