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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.141 C 0.359 G 0.359 T 0.141 

MOTIF 1-AGTGCCCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 1.2e-001
 0.621271 0.157119 0.001791 0.219819
 0.035330 0.205973 0.757991 0.000706
 0.000706 0.001791 0.001791 0.995711
 0.000706 0.001791 0.996796 0.000706
 0.000706 0.962172 0.001791 0.035330
 0.000706 0.962172 0.001791 0.035330
 0.000706 0.996796 0.001791 0.000706
 0.856545 0.001791 0.001791 0.139872

MOTIF 2-CTGGCACV STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 137 P= 2.8e-001
 0.005181 0.926275 0.000925 0.067620
 0.000365 0.000925 0.223613 0.775097
 0.000365 0.000925 0.998346 0.000365
 0.000365 0.000925 0.998346 0.000365
 0.000365 0.869602 0.129669 0.000365
 0.899384 0.076224 0.024027 0.000365
 0.000365 0.981507 0.017764 0.000365
 0.308870 0.393953 0.203957 0.093221

MOTIF 3-GGGCASCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 3.5e-001
 0.000656 0.001665 0.997023 0.000656
 0.000656 0.001665 0.997023 0.000656
 0.000656 0.001665 0.997023 0.000656
 0.000656 0.983703 0.001665 0.013976
 0.779865 0.001665 0.217814 0.000656
 0.133574 0.313846 0.416350 0.136230
 0.000656 0.997023 0.001665 0.000656
 0.000656 0.001665 0.997023 0.000656

MOTIF 4-GCGGGCGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 6.7e-001
 0.013518 0.032732 0.900769 0.052981
 0.016196 0.914529 0.001610 0.067665
 0.000635 0.063955 0.841108 0.094302
 0.016196 0.018379 0.964790 0.000635
 0.013518 0.068640 0.917206 0.000635
 0.080644 0.917111 0.001610 0.000635
 0.000635 0.001610 0.965998 0.031757
 0.810784 0.001610 0.106962 0.080644

MOTIF 5-AGGGTGAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.991284 0.003640 0.003640 0.001435
 0.001435 0.074002 0.923128 0.001435
 0.001435 0.215405 0.781724 0.001435
 0.001435 0.003640 0.993489 0.001435
 0.001435 0.003640 0.003640 0.991284
 0.001435 0.003640 0.993489 0.001435
 0.991284 0.003640 0.003640 0.001435
 0.071797 0.215405 0.711362 0.001435

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/HNRNPL.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_HNRNPL/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.43 seconds
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