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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.288 C 0.212 G 0.212 T 0.288 

MOTIF 1-CCCACCCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.2e-001
 0.026145 0.928400 0.019309 0.026145
 0.026145 0.928400 0.019309 0.026145
 0.026145 0.928400 0.019309 0.026145
 0.935236 0.019309 0.019309 0.026145
 0.026145 0.928400 0.019309 0.026145
 0.026145 0.928400 0.019309 0.026145
 0.026145 0.928400 0.019309 0.026145
 0.026145 0.928400 0.019309 0.026145

MOTIF 2-AGTCATCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.906891 0.089915 0.001357 0.001837
 0.090538 0.089915 0.817710 0.001837
 0.001837 0.001357 0.134336 0.862470
 0.046116 0.862132 0.001357 0.090395
 0.818333 0.045636 0.134194 0.001837
 0.046116 0.045636 0.001357 0.906891
 0.001837 0.684157 0.045636 0.268370
 0.001837 0.817853 0.045636 0.134674

MOTIF 3-GGARGGGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 93 P= 6.4e-001
 0.000965 0.000713 0.997357 0.000965
 0.000965 0.000713 0.917883 0.080439
 0.801323 0.038549 0.000713 0.159415
 0.555848 0.000713 0.433088 0.010351
 0.000965 0.000713 0.997357 0.000965
 0.000965 0.010340 0.987730 0.000965
 0.000965 0.000713 0.870866 0.127456
 0.943456 0.000713 0.000713 0.055118

MOTIF 4-ATTATCWW STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 7.6e-001
 0.992017 0.002380 0.002380 0.003223
 0.003223 0.002380 0.002380 0.992017
 0.003223 0.002380 0.002380 0.992017
 0.992017 0.002380 0.002380 0.003223
 0.003223 0.002380 0.002380 0.992017
 0.003223 0.991174 0.002380 0.003223
 0.549183 0.002380 0.002380 0.446056
 0.549183 0.002380 0.002380 0.446056

MOTIF 5-ACAAAAGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.991277 0.002601 0.002601 0.003522
 0.003522 0.990356 0.002601 0.003522
 0.736374 0.172627 0.002601 0.088398
 0.991277 0.002601 0.002601 0.003522
 0.821523 0.087477 0.002601 0.088398
 0.991277 0.002601 0.002601 0.003522
 0.003522 0.002601 0.990356 0.003522
 0.991277 0.002601 0.002601 0.003522

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/HNRNPK.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_HNRNPK/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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