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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.275 C 0.225 G 0.225 T 0.275 

MOTIF 1-ACTAGTTA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 124 P= 3.8e-004
 0.640825 0.000414 0.304120 0.054641
 0.000506 0.998574 0.000414 0.000506
 0.000506 0.000414 0.000414 0.998666
 0.872005 0.025939 0.101551 0.000506
 0.000506 0.000414 0.998574 0.000506
 0.000506 0.000414 0.064338 0.934742
 0.073305 0.212355 0.000414 0.713926
 0.900138 0.054628 0.044728 0.000506

MOTIF 2-AAGATTAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.5e-002
 0.891642 0.001358 0.029243 0.077757
 0.827913 0.001358 0.043185 0.127544
 0.001659 0.043185 0.869709 0.085447
 0.995625 0.001358 0.001358 0.001659
 0.001659 0.001358 0.043185 0.953798
 0.043486 0.001358 0.043185 0.911971
 0.894386 0.001358 0.018673 0.085582
 0.018974 0.043185 0.865832 0.072009

MOTIF 3-GAGATAAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 7.6e-001
 0.061459 0.131029 0.719735 0.087777
 0.929793 0.000700 0.022246 0.047261
 0.044017 0.011473 0.943655 0.000855
 0.991345 0.000700 0.007101 0.000855
 0.000855 0.011473 0.009619 0.978053
 0.868154 0.043862 0.022281 0.065703
 0.954653 0.022246 0.022246 0.000855
 0.073290 0.751523 0.109484 0.065703

MOTIF 4-AAGGTTAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 7.6e-001
 0.993928 0.001885 0.001885 0.002302
 0.993928 0.001885 0.001885 0.002302
 0.002302 0.059928 0.935468 0.002302
 0.002302 0.001885 0.993511 0.002302
 0.234660 0.001885 0.176574 0.586881
 0.002302 0.001885 0.001885 0.993928
 0.993928 0.001885 0.001885 0.002302
 0.703341 0.059928 0.001885 0.234846

MOTIF 5-CTCCCCCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.024002 0.931513 0.001347 0.043137
 0.077135 0.001347 0.001347 0.920171
 0.005456 0.824168 0.001347 0.169029
 0.001646 0.894710 0.001347 0.102297
 0.001646 0.953870 0.001347 0.043137
 0.210448 0.745000 0.001347 0.043204
 0.084763 0.912244 0.001347 0.001646
 0.912676 0.001347 0.042839 0.043137

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/HMBOX1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_HMBOX1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.43 seconds
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