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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.276 C 0.224 G 0.224 T 0.276 

MOTIF 1-CCCCTCTC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 2.0e-003
 0.025118 0.929427 0.020336 0.025118
 0.025118 0.929427 0.020336 0.025118
 0.025118 0.929427 0.020336 0.025118
 0.025118 0.929427 0.020336 0.025118
 0.025118 0.020336 0.020336 0.934209
 0.025118 0.929427 0.020336 0.025118
 0.025118 0.020336 0.020336 0.934209
 0.025118 0.929427 0.020336 0.025118

MOTIF 2-AGAGGAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 2.4e-002
 0.934209 0.020336 0.020336 0.025118
 0.025118 0.020336 0.929427 0.025118
 0.934209 0.020336 0.020336 0.025118
 0.025118 0.020336 0.929427 0.025118
 0.025118 0.020336 0.929427 0.025118
 0.934209 0.020336 0.020336 0.025118
 0.934209 0.020336 0.020336 0.025118
 0.934209 0.020336 0.020336 0.025118

MOTIF 3-AGTTAAAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 5.5e-002
 0.997591 0.000745 0.000745 0.000920
 0.000920 0.000745 0.997416 0.000920
 0.000920 0.000745 0.000745 0.997591
 0.000920 0.209865 0.000745 0.788470
 0.928287 0.023821 0.046972 0.000920
 0.997591 0.000745 0.000745 0.000920
 0.904837 0.000745 0.093498 0.000920
 0.000920 0.000745 0.997416 0.000920

MOTIF 4-AACAYGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 5.5e-002
 0.996824 0.000982 0.000982 0.001213
 0.996824 0.000982 0.000982 0.001213
 0.001213 0.996593 0.000982 0.001213
 0.966403 0.000982 0.031403 0.001213
 0.001213 0.372641 0.000982 0.625164
 0.001213 0.000982 0.996593 0.001213
 0.966403 0.000982 0.000982 0.031634
 0.996824 0.000982 0.000982 0.001213

MOTIF 5-AATAAACC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 6.9e-002
 0.997920 0.000643 0.000643 0.000794
 0.857108 0.000643 0.141455 0.000794
 0.000794 0.000643 0.000643 0.997920
 0.977998 0.020565 0.000643 0.000794
 0.977998 0.020565 0.000643 0.000794
 0.989673 0.000643 0.000643 0.009041
 0.000794 0.997769 0.000643 0.000794
 0.000794 0.989522 0.008890 0.000794

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/HLTF.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_HLTF/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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