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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.23 C 0.27 G 0.27 T 0.23 

MOTIF 1-AGCGGACC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 159 P= 3.6e-002
 0.674029 0.126893 0.089582 0.109496
 0.158762 0.090201 0.714342 0.036695
 0.082017 0.903037 0.002459 0.012486
 0.000402 0.036802 0.950310 0.012486
 0.030652 0.024639 0.932222 0.012486
 0.945258 0.036782 0.005473 0.012486
 0.012486 0.968515 0.018597 0.000402
 0.006913 0.793050 0.151179 0.048857

MOTIF 2-TAGCYAAR STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.2e-001
 0.000937 0.001096 0.001096 0.996870
 0.996870 0.001096 0.001096 0.000937
 0.012607 0.001096 0.889119 0.097178
 0.000937 0.968839 0.029287 0.000937
 0.000937 0.347302 0.029287 0.622475
 0.824934 0.001096 0.029287 0.144683
 0.671392 0.001096 0.326575 0.000937
 0.394067 0.012766 0.552369 0.040797

MOTIF 3-GTCCTCAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 73 P= 2.1e-001
 0.000772 0.000903 0.997554 0.000772
 0.023982 0.000903 0.047399 0.927716
 0.000772 0.864125 0.000903 0.134201
 0.023982 0.935304 0.000903 0.039811
 0.000772 0.003034 0.000903 0.995292
 0.000772 0.974344 0.000903 0.023982
 0.997423 0.000903 0.000903 0.000772
 0.665729 0.328157 0.000903 0.005211

MOTIF 4-AAATGTTC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.930036 0.024509 0.024509 0.020945
 0.930036 0.024509 0.024509 0.020945
 0.930036 0.024509 0.024509 0.020945
 0.020945 0.024509 0.024509 0.930036
 0.020945 0.024509 0.933600 0.020945
 0.020945 0.024509 0.024509 0.930036
 0.020945 0.024509 0.024509 0.930036
 0.020945 0.933600 0.024509 0.020945

MOTIF 5-CCACCCCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 5.0e-001
 0.001235 0.996084 0.001446 0.001235
 0.001235 0.996084 0.001446 0.001235
 0.847033 0.001446 0.150286 0.001235
 0.001235 0.996084 0.001446 0.001235
 0.001235 0.753662 0.243868 0.001235
 0.001235 0.996084 0.001446 0.001235
 0.001235 0.809537 0.187992 0.001235
 0.001235 0.921753 0.075776 0.001235

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/HINFP.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_HINFP/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.66 seconds
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