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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.227 C 0.273 G 0.273 T 0.227 

MOTIF 1-AATTTCCT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 2.4e-001
 0.745438 0.002436 0.064205 0.187922
 0.931340 0.002436 0.064205 0.002019
 0.002019 0.002436 0.002436 0.993108
 0.063788 0.002436 0.002436 0.931340
 0.002019 0.002436 0.002436 0.993108
 0.063788 0.869989 0.002436 0.063788
 0.002019 0.993525 0.002436 0.002019
 0.063788 0.126172 0.002436 0.807605

MOTIF 2-CCCAGCTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 2.4e-001
 0.002299 0.992629 0.002774 0.002299
 0.002299 0.922308 0.073094 0.002299
 0.143166 0.711008 0.073094 0.072732
 0.992154 0.002774 0.002774 0.002299
 0.143166 0.002774 0.851762 0.002299
 0.002299 0.992629 0.002774 0.002299
 0.002299 0.002774 0.002774 0.992154
 0.992154 0.002774 0.002774 0.002299

MOTIF 3-GCAGAGAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 3.0e-001
 0.068151 0.048810 0.834468 0.048572
 0.028470 0.681823 0.000943 0.288765
 0.853808 0.120573 0.024838 0.000781
 0.000781 0.072705 0.925732 0.000781
 0.949543 0.048733 0.000943 0.000781
 0.000781 0.072705 0.901837 0.024676
 0.861850 0.024838 0.064740 0.048572
 0.117408 0.241485 0.010586 0.630520

MOTIF 4-GCCCCGCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 3.5e-001
 0.009453 0.001234 0.988290 0.001023
 0.001023 0.920881 0.014188 0.063908
 0.032364 0.944340 0.001234 0.022062
 0.063908 0.902443 0.001234 0.032415
 0.081252 0.853808 0.063917 0.001023
 0.001023 0.001234 0.996720 0.001023
 0.001023 0.983766 0.001234 0.013976
 0.032314 0.934138 0.001234 0.032314

MOTIF 5-AGCCCCAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 7.6e-001
 0.901269 0.095924 0.001535 0.001272
 0.001272 0.119021 0.839524 0.040182
 0.079218 0.879065 0.001535 0.040182
 0.034794 0.962400 0.001535 0.001272
 0.001272 0.979814 0.017642 0.001272
 0.118379 0.761958 0.079480 0.040182
 0.995658 0.001535 0.001535 0.001272
 0.118379 0.801810 0.066980 0.012832

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/HDGF.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_HDGF/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	1.43 seconds
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