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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.243 C 0.257 G 0.257 T 0.243 

MOTIF 1-AGGCYGAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 67 P= 1.1e-002
 0.997429 0.000872 0.000872 0.000827
 0.000827 0.047985 0.950360 0.000827
 0.000827 0.000872 0.997474 0.000827
 0.188810 0.699199 0.000872 0.111118
 0.000827 0.393096 0.014079 0.591998
 0.142489 0.000872 0.725032 0.131607
 0.997429 0.000872 0.000872 0.000827
 0.000827 0.000872 0.997474 0.000827

MOTIF 2-ACTCCATC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 72 P= 4.9e-002
 0.998285 0.000582 0.000582 0.000552
 0.000552 0.998315 0.000582 0.000552
 0.032077 0.221975 0.000582 0.745366
 0.000552 0.998315 0.000582 0.000552
 0.000552 0.998315 0.000582 0.000552
 0.903504 0.000582 0.095363 0.000552
 0.000552 0.000582 0.000582 0.998285
 0.000552 0.824002 0.000582 0.174865

MOTIF 3-CTATTCAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 1.7e-001
 0.000959 0.942434 0.028329 0.028277
 0.000959 0.001011 0.001011 0.997018
 0.997018 0.001011 0.001011 0.000959
 0.000959 0.216386 0.001011 0.781644
 0.000959 0.066956 0.001011 0.931073
 0.161610 0.770387 0.001011 0.066992
 0.997018 0.001011 0.001011 0.000959
 0.969700 0.001011 0.001011 0.028277

MOTIF 4-ATTTTACC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 2.4e-001
 0.996942 0.001037 0.001037 0.000984
 0.000984 0.001037 0.012633 0.985347
 0.057095 0.001037 0.001037 0.940831
 0.000984 0.029048 0.001037 0.968932
 0.000984 0.029048 0.012633 0.957336
 0.996942 0.001037 0.001037 0.000984
 0.057095 0.884772 0.057149 0.000984
 0.085287 0.856580 0.001037 0.057095

MOTIF 5-GGAATGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 3.3e-001
 0.044736 0.000812 0.941855 0.012596
 0.022718 0.022760 0.953752 0.000771
 0.957674 0.040743 0.000812 0.000771
 0.798939 0.044778 0.133565 0.022718
 0.066932 0.000812 0.000812 0.931443
 0.111218 0.009898 0.834148 0.044736
 0.044736 0.877884 0.074595 0.002786
 0.979433 0.000812 0.009898 0.009856

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/HDAC8.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_HDAC8/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n06.farnam.hpc.yale.internal
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FINALTIME:	1.43 seconds
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