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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.231 C 0.269 G 0.269 T 0.231 

MOTIF 1-AATCTCTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 1.2e-002
 0.983873 0.001192 0.001192 0.013743
 0.965819 0.001192 0.001192 0.031797
 0.031797 0.031965 0.007068 0.929169
 0.001024 0.891505 0.075722 0.031748
 0.046057 0.007392 0.001192 0.945359
 0.001024 0.926936 0.009469 0.062571
 0.265094 0.001192 0.031965 0.701749
 0.001024 0.062837 0.811222 0.124916

MOTIF 2-CCCACGTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 5.5e-002
 0.000761 0.831893 0.138883 0.028463
 0.069722 0.725829 0.178078 0.026371
 0.010216 0.735875 0.230309 0.023600
 0.997466 0.000886 0.000886 0.000761
 0.000761 0.813994 0.184483 0.000761
 0.023600 0.026495 0.926304 0.023600
 0.010216 0.056166 0.000886 0.932732
 0.000761 0.000886 0.997591 0.000761

MOTIF 3-CTTATCTS STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 3.0e-001
 0.017412 0.733111 0.113506 0.135972
 0.000561 0.017477 0.007617 0.974345
 0.010764 0.000653 0.000653 0.987931
 0.981310 0.000653 0.017477 0.000561
 0.000561 0.000653 0.000653 0.998134
 0.000561 0.930603 0.068275 0.000561
 0.067965 0.000653 0.000653 0.930730
 0.169782 0.470423 0.291776 0.068020

MOTIF 4-GTGACTCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.0e-001
 0.021009 0.024445 0.933536 0.021009
 0.021009 0.024445 0.024445 0.930100
 0.021009 0.024445 0.933536 0.021009
 0.930100 0.024445 0.024445 0.021009
 0.021009 0.933536 0.024445 0.021009
 0.021009 0.024445 0.024445 0.930100
 0.021009 0.933536 0.024445 0.021009
 0.930100 0.024445 0.024445 0.021009

MOTIF 5-GTTAGAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.038584 0.076246 0.809247 0.075923
 0.001245 0.001449 0.038787 0.958519
 0.075923 0.001449 0.001449 0.921180
 0.584408 0.263302 0.076126 0.076163
 0.001245 0.008590 0.914242 0.075923
 0.771705 0.001449 0.076246 0.150600
 0.793345 0.038787 0.166622 0.001245
 0.921180 0.001449 0.001449 0.075923

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/HDAC1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_HDAC1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.45 seconds
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