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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.227 C 0.273 G 0.273 T 0.227 

MOTIF 1-CAACATGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 121 P= 5.1e-005
 0.010564 0.968209 0.000403 0.020825
 0.933035 0.025215 0.031187 0.010564
 0.987112 0.001922 0.010631 0.000335
 0.010564 0.888969 0.010648 0.089820
 0.922022 0.036327 0.031088 0.010564
 0.000335 0.062104 0.010631 0.926929
 0.148233 0.000403 0.851029 0.000335
 0.020825 0.025094 0.943518 0.010564

MOTIF 2-AGTTCGAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 150 P= 1.0e-004
 0.929971 0.008418 0.061346 0.000265
 0.000265 0.000319 0.999150 0.000265
 0.008364 0.000319 0.024694 0.966623
 0.000265 0.000319 0.000319 0.999097
 0.000265 0.999150 0.000319 0.000265
 0.190932 0.000319 0.794862 0.013887
 0.999097 0.000319 0.000319 0.000265
 0.008364 0.000319 0.991052 0.000265

MOTIF 3-CGTCTCTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 89 P= 4.8e-003
 0.024999 0.785666 0.000483 0.188852
 0.128793 0.000483 0.845725 0.024999
 0.000402 0.000483 0.000483 0.998631
 0.000402 0.949479 0.012762 0.037357
 0.000402 0.025080 0.000483 0.974034
 0.000402 0.961758 0.037438 0.000402
 0.000402 0.000483 0.000483 0.998631
 0.974034 0.025080 0.000483 0.000402

MOTIF 4-ATACAAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 88 P= 5.3e-003
 0.852188 0.053765 0.067077 0.026970
 0.000433 0.148390 0.000521 0.850656
 0.985300 0.000521 0.013746 0.000433
 0.000433 0.945583 0.013746 0.040238
 0.998525 0.000521 0.000521 0.000433
 0.945495 0.013746 0.040325 0.000433
 0.985300 0.000521 0.013746 0.000433
 0.972074 0.013746 0.000521 0.013659

MOTIF 5-GGGATTAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 84 P= 2.5e-002
 0.000408 0.000490 0.998694 0.000408
 0.000408 0.025436 0.973748 0.000408
 0.025354 0.025436 0.948802 0.000408
 0.954145 0.012943 0.032504 0.000408
 0.021353 0.139721 0.000490 0.838436
 0.012861 0.000490 0.025436 0.961213
 0.973666 0.000490 0.025436 0.000408
 0.000408 0.961215 0.000490 0.037887

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/GTF3C2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_GTF3C2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n01.farnam.hpc.yale.internal
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FINALTIME:	2.36 seconds
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