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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.265 C 0.235 G 0.235 T 0.265 

MOTIF 1-AGATGGAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 65 P= 2.5e-002
 0.923893 0.000624 0.074776 0.000706
 0.114859 0.009849 0.856137 0.019155
 0.953292 0.000624 0.045377 0.000706
 0.013005 0.000624 0.000624 0.985746
 0.000706 0.000624 0.979514 0.019155
 0.008343 0.000624 0.971877 0.019155
 0.892953 0.019073 0.031654 0.056320
 0.059990 0.019073 0.883274 0.037663

MOTIF 2-ATAAAAGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 1.2e-001
 0.995999 0.001278 0.001278 0.001446
 0.001446 0.001278 0.001278 0.995999
 0.995999 0.001278 0.001278 0.001446
 0.768741 0.001278 0.228535 0.001446
 0.692501 0.001278 0.304776 0.001446
 0.882615 0.001278 0.001278 0.114830
 0.001446 0.001278 0.995831 0.001446
 0.001446 0.995831 0.001278 0.001446

MOTIF 3-CTGGTTCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 2.4e-001
 0.024127 0.930418 0.021327 0.024127
 0.024127 0.021327 0.021327 0.933218
 0.024127 0.021327 0.930418 0.024127
 0.024127 0.021327 0.930418 0.024127
 0.024127 0.021327 0.021327 0.933218
 0.024127 0.021327 0.021327 0.933218
 0.024127 0.930418 0.021327 0.024127
 0.933218 0.021327 0.021327 0.024127

MOTIF 4-AAGATTTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 2.4e-001
 0.933218 0.021327 0.021327 0.024127
 0.933218 0.021327 0.021327 0.024127
 0.024127 0.021327 0.930418 0.024127
 0.933218 0.021327 0.021327 0.024127
 0.024127 0.021327 0.021327 0.933218
 0.024127 0.021327 0.021327 0.933218
 0.024127 0.021327 0.021327 0.933218
 0.933218 0.021327 0.021327 0.024127

MOTIF 5-AATCCCAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 8.3e-001
 0.917593 0.071027 0.010484 0.000896
 0.646966 0.009835 0.131212 0.211986
 0.047794 0.047690 0.000792 0.903723
 0.071206 0.856720 0.000792 0.071282
 0.000896 0.950592 0.047615 0.000896
 0.000896 0.738674 0.024204 0.236225
 0.964416 0.000792 0.033895 0.000896
 0.000896 0.000792 0.997415 0.000896

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/GTF2A2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_GTF2A2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n02.farnam.hpc.yale.internal
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FINALTIME:	1.57 seconds
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