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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.165 C 0.335 G 0.335 T 0.165 

MOTIF 1-CCCGCCCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 4.9e-002
 0.001034 0.995834 0.002098 0.001034
 0.001034 0.995834 0.002098 0.001034
 0.001034 0.822047 0.175886 0.001034
 0.001034 0.002098 0.995834 0.001034
 0.001034 0.897872 0.100061 0.001034
 0.001034 0.995834 0.002098 0.001034
 0.001034 0.995834 0.002098 0.001034
 0.001034 0.995834 0.002098 0.001034

MOTIF 2-CGTCACYG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 5.5e-002
 0.061156 0.815644 0.031679 0.091521
 0.000719 0.001460 0.997101 0.000719
 0.000719 0.001460 0.001460 0.996360
 0.030938 0.916056 0.052286 0.000719
 0.941381 0.001460 0.056439 0.000719
 0.091472 0.906348 0.001460 0.000719
 0.000719 0.479945 0.127880 0.391455
 0.081764 0.001460 0.916056 0.000719

MOTIF 3-GCACGCAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 3.5e-001
 0.001307 0.002653 0.994733 0.001307
 0.011807 0.878388 0.002653 0.107152
 0.993387 0.002653 0.002653 0.001307
 0.166526 0.804171 0.011687 0.017615
 0.001307 0.017442 0.979944 0.001307
 0.028755 0.915816 0.002653 0.052776
 0.993387 0.002653 0.002653 0.001307
 0.101183 0.872702 0.002653 0.023462

MOTIF 4-ACCAAWSA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 5.0e-001
 0.763005 0.052877 0.183504 0.000615
 0.052244 0.917709 0.029433 0.000615
 0.000615 0.997523 0.001248 0.000615
 0.945261 0.052877 0.001248 0.000615
 0.831233 0.001248 0.078775 0.088745
 0.442251 0.063563 0.001248 0.492938
 0.052244 0.493738 0.401774 0.052244
 0.841960 0.052877 0.052919 0.052244

MOTIF 5-GACTACAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.158040 0.002518 0.838202 0.001240
 0.941541 0.002518 0.002518 0.053423
 0.053339 0.942903 0.002518 0.001240
 0.053339 0.002518 0.054617 0.889526
 0.941625 0.002518 0.054617 0.001240
 0.001240 0.995002 0.002518 0.001240
 0.941625 0.002518 0.054617 0.001240
 0.680121 0.054617 0.054617 0.210645

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/GMEB1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_GMEB1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n03.farnam.hpc.yale.internal
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FINALTIME:	1.41 seconds
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