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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.161 C 0.339 G 0.339 T 0.161 

MOTIF 1-CGGGACCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 3.0e-001
 0.163960 0.833119 0.001979 0.000942
 0.058152 0.001979 0.938927 0.000942
 0.000942 0.247302 0.734051 0.017705
 0.041500 0.001979 0.938817 0.017705
 0.995100 0.001979 0.001979 0.000942
 0.008687 0.988392 0.001979 0.000942
 0.000942 0.996137 0.001979 0.000942
 0.046346 0.950733 0.001979 0.000942

MOTIF 2-CCGCCCAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 3.0e-001
 0.223353 0.771335 0.003598 0.001714
 0.001714 0.992974 0.003598 0.001714
 0.075356 0.003598 0.919332 0.001714
 0.001714 0.919332 0.003598 0.075356
 0.001714 0.992974 0.003598 0.001714
 0.075356 0.919332 0.003598 0.001714
 0.991089 0.003598 0.003598 0.001714
 0.001714 0.992974 0.003598 0.001714

MOTIF 3-CCGCCGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 5.0e-001
 0.014664 0.939882 0.030791 0.014664
 0.014664 0.939882 0.030791 0.014664
 0.014664 0.030791 0.939882 0.014664
 0.014664 0.939882 0.030791 0.014664
 0.014664 0.939882 0.030791 0.014664
 0.014664 0.030791 0.939882 0.014664
 0.014664 0.939882 0.030791 0.014664
 0.014664 0.939882 0.030791 0.014664

MOTIF 4-GCCGGGGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 9.7e-001
 0.040833 0.001950 0.853702 0.103515
 0.040833 0.948656 0.001950 0.008561
 0.040833 0.836189 0.001950 0.121028
 0.017448 0.001950 0.818694 0.161908
 0.097730 0.001950 0.859488 0.040833
 0.000929 0.001950 0.934541 0.062580
 0.012783 0.001950 0.984338 0.000929
 0.995172 0.001950 0.001950 0.000929

MOTIF 5-SCCGCGGS STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 1.0e+000
 0.014664 0.485336 0.485336 0.014664
 0.014664 0.939882 0.030791 0.014664
 0.014664 0.939882 0.030791 0.014664
 0.014664 0.030791 0.939882 0.014664
 0.014664 0.939882 0.030791 0.014664
 0.014664 0.030791 0.939882 0.014664
 0.014664 0.030791 0.939882 0.014664
 0.014664 0.485336 0.485336 0.014664

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/GATAD2B.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_GATAD2B/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.46 seconds
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