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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.212 C 0.287 G 0.287 T 0.212 

MOTIF 1-CCCTCCCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 3.8e-001
 0.011148 0.954973 0.032733 0.001147
 0.111474 0.828018 0.059361 0.001147
 0.021308 0.813165 0.012668 0.152860
 0.120960 0.001552 0.025816 0.851671
 0.069222 0.791780 0.096413 0.042585
 0.034775 0.944328 0.019750 0.001147
 0.013355 0.919475 0.066022 0.001147
 0.042262 0.917621 0.038969 0.001147

MOTIF 2-TCTTGCCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 5.0e-001
 0.000810 0.027522 0.053948 0.917720
 0.000810 0.914758 0.053990 0.030441
 0.177471 0.133738 0.001096 0.687695
 0.265324 0.027522 0.012036 0.695118
 0.106514 0.001096 0.891580 0.000810
 0.080173 0.838643 0.001096 0.080088
 0.011750 0.907067 0.001096 0.080088
 0.917720 0.001096 0.053948 0.027236

MOTIF 3-CTGGGGAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.128250 0.868700 0.001753 0.001296
 0.001296 0.001753 0.044162 0.952788
 0.001296 0.044026 0.783882 0.170796
 0.001296 0.213937 0.783471 0.001296
 0.001296 0.001753 0.953382 0.043569
 0.001296 0.146572 0.808495 0.043637
 0.995197 0.001753 0.001753 0.001296
 0.995197 0.001753 0.001753 0.001296

MOTIF 4-CCTCGGCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.066457 0.777851 0.154761 0.000931
 0.000931 0.936172 0.061967 0.000931
 0.000931 0.031613 0.031613 0.935843
 0.000931 0.916342 0.081797 0.000931
 0.013496 0.013509 0.941710 0.031285
 0.031285 0.092615 0.875170 0.000931
 0.000931 0.996880 0.001259 0.000931
 0.000931 0.246165 0.062065 0.690839

MOTIF 5-AAGATAAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 5.0e-001
 0.577475 0.001385 0.252967 0.168173
 0.922940 0.068266 0.001385 0.007409
 0.001024 0.001385 0.996568 0.001024
 0.862444 0.068266 0.001385 0.067905
 0.001024 0.001385 0.001385 0.996207
 0.962820 0.001385 0.001385 0.034410
 0.929433 0.034772 0.001385 0.034410
 0.168605 0.001385 0.828986 0.001024

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/GATAD2A.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_GATAD2A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	2.94 seconds
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