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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.277 C 0.223 G 0.223 T 0.277 

MOTIF 1-RAGATAAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 177 P= 6.0e-004
 0.301722 0.133854 0.444017 0.120407
 0.890880 0.061062 0.000325 0.047733
 0.000403 0.000325 0.998869 0.000403
 0.998947 0.000325 0.000325 0.000403
 0.000403 0.000325 0.000325 0.998947
 0.998947 0.000325 0.000325 0.000403
 0.998947 0.000325 0.000325 0.000403
 0.187789 0.221300 0.489188 0.101724

MOTIF 2-AAATGCTT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 2.4e-001
 0.993711 0.001941 0.001941 0.002406
 0.993711 0.001941 0.001941 0.002406
 0.933448 0.001941 0.001941 0.062670
 0.002406 0.001941 0.001941 0.993711
 0.062670 0.001941 0.872719 0.062670
 0.123127 0.666204 0.026889 0.183780
 0.183780 0.001941 0.001941 0.812337
 0.123127 0.001941 0.001941 0.872990

MOTIF 3-AGTAGATT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 6.3e-001
 0.929416 0.002056 0.002056 0.066472
 0.066370 0.129905 0.801178 0.002548
 0.002548 0.002056 0.002056 0.993340
 0.865491 0.002056 0.002056 0.130397
 0.028968 0.002056 0.940008 0.028968
 0.801669 0.129905 0.002056 0.066370
 0.066370 0.129905 0.002056 0.801669
 0.066370 0.002056 0.002056 0.929518

MOTIF 4-ACCATGAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 7.6e-001
 0.966118 0.031669 0.000988 0.001225
 0.031906 0.843060 0.062350 0.062685
 0.031906 0.904520 0.000988 0.062586
 0.677191 0.031669 0.228553 0.062586
 0.093366 0.277710 0.000988 0.627936
 0.031906 0.062350 0.781202 0.124543
 0.707675 0.044370 0.093129 0.154826
 0.031906 0.965881 0.000988 0.001225

MOTIF 5-GAGATTAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 7.6e-001
 0.094573 0.026432 0.842431 0.036564
 0.902593 0.047779 0.001491 0.048136
 0.001848 0.001491 0.990563 0.006098
 0.902593 0.047779 0.047779 0.001848
 0.048136 0.001491 0.001491 0.948882
 0.001848 0.001491 0.113778 0.882883
 0.864666 0.001491 0.047779 0.086063
 0.141385 0.001491 0.762550 0.094573

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/GATA2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_GATA2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	3.25 seconds
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