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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.232 C 0.268 G 0.268 T 0.232 

MOTIF 1-CTTATCTS STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 199 P= 2.6e-004
 0.051068 0.799233 0.094637 0.055062
 0.000299 0.043046 0.000347 0.956308
 0.024334 0.000347 0.000347 0.974972
 0.999007 0.000347 0.000347 0.000299
 0.000299 0.000347 0.000347 0.999007
 0.000299 0.990092 0.000347 0.009261
 0.130507 0.000347 0.082584 0.786562
 0.117649 0.336329 0.473419 0.072602

MOTIF 2-ATTTCCTT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 2.4e-001
 0.895380 0.051482 0.051482 0.001656
 0.001656 0.001919 0.101204 0.895221
 0.001656 0.151086 0.101204 0.746054
 0.001656 0.001919 0.001919 0.994506
 0.001656 0.895643 0.051482 0.051219
 0.001656 0.994769 0.001919 0.001656
 0.001656 0.001919 0.150767 0.845658
 0.100781 0.151086 0.001919 0.746213

MOTIF 3-CCCAGCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 6.7e-001
 0.001617 0.994891 0.001874 0.001617
 0.001617 0.946486 0.050279 0.001617
 0.033887 0.962621 0.001874 0.001617
 0.865947 0.082157 0.050279 0.001617
 0.050022 0.126314 0.773642 0.050022
 0.001617 0.800333 0.001874 0.196176
 0.001617 0.946486 0.050279 0.001617
 0.001617 0.994891 0.001874 0.001617

MOTIF 4-AATGACTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.794297 0.002553 0.200948 0.002203
 0.794297 0.002553 0.200948 0.002203
 0.002203 0.002553 0.068472 0.926773
 0.002203 0.002553 0.993042 0.002203
 0.860854 0.068472 0.068472 0.002203
 0.002203 0.993042 0.002553 0.002203
 0.002203 0.068472 0.002553 0.926773
 0.134253 0.002553 0.068472 0.794722

MOTIF 5-ATGGAAGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.993563 0.002248 0.002248 0.001940
 0.001940 0.002248 0.002248 0.993563
 0.118256 0.002248 0.877556 0.001940
 0.060005 0.118564 0.761427 0.060005
 0.993563 0.002248 0.002248 0.001940
 0.935499 0.060313 0.002248 0.001940
 0.001940 0.118564 0.877556 0.001940
 0.001940 0.935807 0.002248 0.060005

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/GATA1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_GATA1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.57 seconds
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