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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.204 C 0.296 G 0.296 T 0.204 

MOTIF 1-ACTTCCGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 231 P= 4.8e-006
 0.851552 0.026240 0.121961 0.000247
 0.000247 0.873613 0.000358 0.125783
 0.022712 0.008767 0.000358 0.968164
 0.008629 0.000358 0.000358 0.990656
 0.008629 0.990767 0.000358 0.000247
 0.000247 0.999149 0.000358 0.000247
 0.000247 0.000358 0.676930 0.322465
 0.000247 0.110240 0.829772 0.059742

MOTIF 2-AATAAACT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 2.4e-001
 0.803225 0.002698 0.129045 0.065033
 0.992745 0.002698 0.002698 0.001859
 0.065033 0.129248 0.108952 0.696767
 0.929572 0.065871 0.002698 0.001859
 0.992745 0.002698 0.002698 0.001859
 0.740051 0.065871 0.065871 0.128206
 0.128206 0.740890 0.065871 0.065033
 0.065033 0.002698 0.129045 0.803225

MOTIF 3-AGACGCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 7.6e-001
 0.865641 0.088112 0.044977 0.001270
 0.173949 0.001842 0.822940 0.001270
 0.865224 0.131665 0.001842 0.001270
 0.001270 0.952484 0.044977 0.001270
 0.001270 0.001842 0.995619 0.001270
 0.001270 0.952484 0.044977 0.001270
 0.001270 0.866214 0.131247 0.001270
 0.519447 0.088251 0.218354 0.173949

MOTIF 4-TCTAGGAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 7.6e-001
 0.002073 0.003008 0.003008 0.991911
 0.002073 0.992846 0.003008 0.002073
 0.002073 0.003008 0.073450 0.921469
 0.991911 0.003008 0.003008 0.002073
 0.072515 0.003008 0.922404 0.002073
 0.002073 0.073450 0.922404 0.002073
 0.780359 0.144118 0.003008 0.072515
 0.851028 0.073450 0.003008 0.072515

MOTIF 5-CCCRCCCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 69 P= 9.1e-001
 0.022827 0.922560 0.006921 0.047692
 0.160871 0.776478 0.061999 0.000653
 0.022827 0.908978 0.023122 0.045073
 0.596476 0.000947 0.401925 0.000653
 0.000653 0.908799 0.000947 0.089602
 0.014101 0.962125 0.023122 0.000653
 0.009832 0.963704 0.000947 0.025517
 0.022827 0.822944 0.000947 0.153282

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/GABPB1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_GABPB1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.72 seconds
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