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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.165 C 0.335 G 0.335 T 0.165 

MOTIF 1-ACTTCCGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 215 P= 2.4e-005
 0.829979 0.026508 0.121477 0.022036
 0.000185 0.926041 0.002339 0.071435
 0.035355 0.000377 0.013188 0.951080
 0.007984 0.000377 0.000377 0.991262
 0.000185 0.999252 0.000377 0.000185
 0.000185 0.999252 0.000377 0.000185
 0.003858 0.000377 0.770065 0.225699
 0.004085 0.102020 0.879086 0.014809

MOTIF 2-ACCGGAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 2.4e-001
 0.990844 0.003675 0.003675 0.001807
 0.001807 0.840498 0.003675 0.154021
 0.001807 0.840498 0.155889 0.001807
 0.001807 0.155889 0.764513 0.077791
 0.077791 0.003675 0.916727 0.001807
 0.990844 0.003675 0.003675 0.001807
 0.990844 0.003675 0.003675 0.001807
 0.990844 0.003675 0.003675 0.001807

MOTIF 3-CCCCRCCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 99 P= 2.6e-001
 0.073184 0.925181 0.001096 0.000539
 0.000539 0.997826 0.001096 0.000539
 0.000539 0.997826 0.001096 0.000539
 0.000539 0.929765 0.023759 0.045938
 0.451671 0.001096 0.437020 0.110213
 0.000539 0.997826 0.001096 0.000539
 0.000539 0.949015 0.001096 0.049350
 0.055515 0.942850 0.001096 0.000539

MOTIF 4-ATTTAGAM STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 8.8e-001
 0.766224 0.001500 0.218700 0.013576
 0.000737 0.076367 0.001500 0.921395
 0.031752 0.156671 0.262553 0.549024
 0.000737 0.032514 0.138396 0.828352
 0.784399 0.094543 0.014339 0.106719
 0.000737 0.032514 0.966011 0.000737
 0.903220 0.032514 0.001500 0.062766
 0.373611 0.443303 0.058192 0.124895

MOTIF 5-CCGCAGCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 9.5e-001
 0.042280 0.954741 0.001997 0.000982
 0.070443 0.826395 0.001997 0.101164
 0.125276 0.092758 0.780984 0.000982
 0.000982 0.913310 0.001997 0.083711
 0.919887 0.001997 0.001997 0.076119
 0.042280 0.001997 0.954741 0.000982
 0.000982 0.996039 0.001997 0.000982
 0.061514 0.001997 0.210164 0.726325

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/GABPA.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_GABPA/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.62 seconds
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