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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.249 C 0.251 G 0.251 T 0.249 

MOTIF 1-AGTAGCAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.839591 0.002751 0.002751 0.154908
 0.002729 0.078718 0.915824 0.002729
 0.002729 0.002751 0.002751 0.991769
 0.839591 0.002751 0.002751 0.154908
 0.002729 0.002751 0.915824 0.078696
 0.002729 0.915824 0.078718 0.002729
 0.991769 0.002751 0.002751 0.002729
 0.231365 0.002751 0.078718 0.687166

MOTIF 2-AGATAATA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 5.0e-001
 0.987327 0.001532 0.001532 0.009610
 0.001520 0.001532 0.995429 0.001520
 0.910819 0.001532 0.043831 0.043819
 0.001520 0.171549 0.001532 0.825400
 0.969816 0.001532 0.009622 0.019030
 0.679960 0.086266 0.019042 0.214732
 0.001520 0.001532 0.043831 0.953118
 0.774890 0.043831 0.043831 0.137448

MOTIF 3-ATATTTTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 5.0e-001
 0.931727 0.022818 0.022818 0.022636
 0.022636 0.022818 0.022818 0.931727
 0.931727 0.022818 0.022818 0.022636
 0.022636 0.022818 0.022818 0.931727
 0.022636 0.022818 0.022818 0.931727
 0.022636 0.022818 0.022818 0.931727
 0.022636 0.022818 0.022818 0.931727
 0.022636 0.022818 0.931909 0.022636

MOTIF 4-CASTCACC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.6e-001
 0.001435 0.955749 0.001446 0.041370
 0.955737 0.041382 0.001446 0.001435
 0.001435 0.299473 0.521254 0.177838
 0.001435 0.001446 0.001446 0.995673
 0.001435 0.995685 0.001446 0.001435
 0.819269 0.001446 0.177850 0.001435
 0.001435 0.995685 0.001446 0.001435
 0.178096 0.579409 0.081318 0.161178

MOTIF 5-AAATGTAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 9.1e-001
 0.855932 0.063695 0.016689 0.063684
 0.913656 0.063695 0.021317 0.001332
 0.899899 0.029980 0.001342 0.068779
 0.049238 0.016689 0.038414 0.895659
 0.001332 0.007443 0.989893 0.001332
 0.001332 0.063695 0.038414 0.896559
 0.880705 0.096646 0.001342 0.021306
 0.660899 0.075605 0.075605 0.187891

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/FUS.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_FUS/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n11.farnam.hpc.yale.internal
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FINALTIME:	1.39 seconds
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