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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.274 C 0.226 G 0.226 T 0.274 

MOTIF 1-CCAATCAS STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 95 P= 1.8e-003
 0.000620 0.998248 0.000512 0.000620
 0.000620 0.951129 0.000512 0.047740
 0.998356 0.000512 0.000512 0.000620
 0.998356 0.000512 0.000512 0.000620
 0.000620 0.000512 0.000512 0.998356
 0.000620 0.809261 0.158094 0.032025
 0.623522 0.245154 0.100453 0.030871
 0.098883 0.356858 0.496519 0.047740

MOTIF 2-ATTYRAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 150 P= 1.1e-002
 0.650822 0.025976 0.052466 0.270736
 0.000394 0.000325 0.014742 0.984539
 0.000394 0.000325 0.015279 0.984002
 0.026832 0.383854 0.000325 0.588989
 0.588989 0.000325 0.383854 0.026832
 0.984002 0.015279 0.000325 0.000394
 0.984539 0.014742 0.000325 0.000394
 0.270736 0.052466 0.025976 0.650822

MOTIF 3-AAGGCAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.2e-001
 0.957521 0.001254 0.001254 0.039971
 0.995972 0.001254 0.001254 0.001519
 0.001519 0.001254 0.763128 0.234098
 0.001519 0.001254 0.995707 0.001519
 0.001519 0.995707 0.001254 0.001519
 0.980055 0.001254 0.017172 0.001519
 0.957459 0.001254 0.001254 0.040032
 0.957521 0.001254 0.001254 0.039971

MOTIF 4-CAGATAAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 2.3e-001
 0.082945 0.611860 0.276918 0.028277
 0.860960 0.000887 0.000887 0.137265
 0.028277 0.000887 0.969761 0.001075
 0.936147 0.016138 0.000887 0.046827
 0.001075 0.028089 0.000887 0.969948
 0.958687 0.028089 0.012148 0.001075
 0.942746 0.028089 0.000887 0.028277
 0.092523 0.082757 0.796443 0.028277

MOTIF 5-ACAGAAAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 9.1e-001
 0.996941 0.000953 0.000953 0.001154
 0.001154 0.955736 0.036371 0.006739
 0.938538 0.000953 0.030154 0.030355
 0.001154 0.059449 0.938243 0.001154
 0.922710 0.059449 0.016687 0.001154
 0.897155 0.059449 0.030154 0.013242
 0.918625 0.000953 0.050068 0.030355
 0.001154 0.824534 0.000953 0.173359

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/FOXM1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_FOXM1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n01.farnam.hpc.yale.internal
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FINALTIME:	1.46 seconds
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