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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.242 C 0.258 G 0.258 T 0.242 

MOTIF 1-GTAAACAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 188 P= 9.5e-008
 0.141442 0.000232 0.858108 0.000218
 0.000218 0.000232 0.000232 0.999318
 0.928974 0.070576 0.000232 0.000218
 0.999318 0.000232 0.000232 0.000218
 0.999318 0.000232 0.000232 0.000218
 0.000218 0.970190 0.000232 0.029360
 0.999318 0.000232 0.000232 0.000218
 0.722905 0.046748 0.121037 0.109310

MOTIF 2-AGCTTCCT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 68 P= 1.3e-002
 0.913976 0.005571 0.041924 0.038530
 0.091439 0.025293 0.858029 0.025239
 0.000852 0.924150 0.049758 0.025239
 0.000852 0.049758 0.000907 0.948482
 0.000852 0.000907 0.000907 0.997334
 0.000852 0.923993 0.000907 0.074248
 0.049783 0.948458 0.000907 0.000852
 0.148360 0.148414 0.074303 0.628924

MOTIF 3-GCMATKGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 47 P= 2.4e-002
 0.128177 0.001119 0.869652 0.001052
 0.001052 0.951595 0.001119 0.046234
 0.498881 0.483903 0.001119 0.016097
 0.996711 0.001119 0.001119 0.001052
 0.001052 0.001119 0.001119 0.996711
 0.016097 0.001119 0.483903 0.498881
 0.046234 0.001119 0.951595 0.001052
 0.001052 0.869652 0.001119 0.128177

MOTIF 4-AGGCTTGR STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 63 P= 3.7e-002
 0.868082 0.000735 0.033990 0.097193
 0.000691 0.000735 0.997883 0.000691
 0.008876 0.008715 0.981718 0.000691
 0.020463 0.950154 0.020507 0.008876
 0.000691 0.060338 0.000735 0.938236
 0.033946 0.000735 0.120150 0.845169
 0.000691 0.000735 0.989698 0.008876
 0.515997 0.048698 0.434614 0.000691

MOTIF 5-GCCCCTCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 1.4e-001
 0.174534 0.000765 0.823983 0.000719
 0.021289 0.977227 0.000765 0.000719
 0.021289 0.956657 0.021335 0.000719
 0.050619 0.927327 0.021335 0.000719
 0.062628 0.927372 0.009280 0.000719
 0.000719 0.000765 0.142977 0.855540
 0.000719 0.997797 0.000765 0.000719
 0.000719 0.977227 0.021335 0.000719

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/FOXK2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_FOXK2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	3.70 seconds
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