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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.145 C 0.355 G 0.355 T 0.145 

MOTIF 1-GCTGCAGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 1.2e-001
 0.154574 0.218000 0.580699 0.046727
 0.172429 0.804560 0.001434 0.021577
 0.121308 0.001434 0.001434 0.875825
 0.000585 0.001434 0.955366 0.042615
 0.042615 0.955366 0.001434 0.000585
 0.875825 0.001434 0.001434 0.121308
 0.021577 0.001434 0.804560 0.172429
 0.046727 0.580699 0.218000 0.154574

MOTIF 2-CGGGGCCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 6.5e-001
 0.001133 0.994956 0.002777 0.001133
 0.001133 0.002777 0.994956 0.001133
 0.001133 0.002777 0.994956 0.001133
 0.001133 0.002777 0.994956 0.001133
 0.152021 0.002777 0.758068 0.087133
 0.321113 0.674977 0.002777 0.001133
 0.001133 0.994956 0.002777 0.001133
 0.001133 0.833881 0.163852 0.001133

MOTIF 3-AGGTGAGG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 8.3e-001
 0.994942 0.002100 0.002100 0.000857
 0.041858 0.019074 0.897210 0.041858
 0.000857 0.158830 0.757453 0.082859
 0.000857 0.071062 0.002100 0.925980
 0.000857 0.002100 0.996185 0.000857
 0.895481 0.101562 0.002100 0.000857
 0.041924 0.166368 0.790850 0.000857
 0.017830 0.167504 0.755834 0.058831

MOTIF 4-GCGCTGCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 67 P= 9.1e-001
 0.005869 0.093706 0.842188 0.058236
 0.000662 0.762638 0.044314 0.192386
 0.010063 0.001621 0.987655 0.000662
 0.000662 0.956899 0.006294 0.036145
 0.000662 0.001621 0.001621 0.996096
 0.032307 0.060961 0.829305 0.077427
 0.016484 0.823621 0.091076 0.068818
 0.032307 0.964949 0.002083 0.000662

MOTIF 5-GTCACCAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.001378 0.003376 0.993868 0.001378
 0.001378 0.003376 0.003376 0.991870
 0.001378 0.729610 0.201730 0.067283
 0.991870 0.003376 0.003376 0.001378
 0.067283 0.862058 0.003376 0.067283
 0.067283 0.862058 0.003376 0.067283
 0.991870 0.003376 0.003376 0.001378
 0.067283 0.201730 0.729610 0.001378

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/FIP1L1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_FIP1L1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	3.03 seconds
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