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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.286 C 0.214 G 0.214 T 0.286 

MOTIF 1-GAGCCACC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 2.4e-001
 0.152421 0.001158 0.844871 0.001549
 0.883405 0.038694 0.001158 0.076742
 0.114520 0.001158 0.810399 0.073922
 0.039085 0.958207 0.001158 0.001549
 0.001549 0.995743 0.001158 0.001549
 0.958598 0.001158 0.038694 0.001549
 0.039085 0.937982 0.001158 0.021774
 0.001549 0.958207 0.038694 0.001549

MOTIF 2-RCCTGTAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 2.4e-001
 0.377997 0.001434 0.618650 0.001918
 0.001918 0.994729 0.001434 0.001918
 0.001918 0.994729 0.001434 0.001918
 0.001918 0.001434 0.001434 0.995213
 0.001918 0.001434 0.994729 0.001918
 0.001918 0.001434 0.001434 0.995213
 0.995213 0.001434 0.001434 0.001918
 0.995213 0.001434 0.001434 0.001918

MOTIF 3-TCCCAGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 7.0e-001
 0.012180 0.081348 0.000826 0.905647
 0.027859 0.862675 0.000826 0.108641
 0.054699 0.916616 0.000826 0.027859
 0.001104 0.970211 0.000826 0.027859
 0.997244 0.000826 0.000826 0.001104
 0.108641 0.008033 0.871146 0.012180
 0.001104 0.943371 0.000826 0.054699
 0.952245 0.000826 0.000826 0.046104

MOTIF 4-GGGGGAAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 8.8e-001
 0.049103 0.001455 0.805339 0.144103
 0.001946 0.048612 0.853030 0.096412
 0.049103 0.001455 0.900338 0.049103
 0.001946 0.001455 0.900186 0.096412
 0.192184 0.095921 0.615484 0.096412
 0.995143 0.001455 0.001455 0.001946
 0.995143 0.001455 0.001455 0.001946
 0.001946 0.001455 0.947495 0.049103

MOTIF 5-CCGGGCGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.003692 0.989856 0.002760 0.003692
 0.003692 0.810673 0.002760 0.182874
 0.003692 0.002760 0.989856 0.003692
 0.003692 0.002760 0.989856 0.003692
 0.003692 0.002760 0.989856 0.003692
 0.003692 0.989856 0.002760 0.003692
 0.182874 0.002760 0.810673 0.003692
 0.003692 0.720649 0.002760 0.272899

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/EWSR1.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_EWSR1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n02.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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