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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.255 C 0.245 G 0.245 T 0.255 

MOTIF 1-AGGAAGTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 201 P= 1.1e-002
 0.941748 0.027954 0.030025 0.000273
 0.000273 0.000263 0.999191 0.000273
 0.000273 0.000263 0.999191 0.000273
 0.991765 0.000263 0.000263 0.007710
 0.999202 0.000263 0.000263 0.000273
 0.095783 0.000263 0.903681 0.000273
 0.059797 0.015164 0.000263 0.924776
 0.216596 0.021971 0.660825 0.100607

MOTIF 2-AAAGAGGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 1.2e-001
 0.872513 0.113836 0.001414 0.012237
 0.995703 0.001414 0.001414 0.001469
 0.983829 0.001414 0.001414 0.013343
 0.001469 0.257875 0.719202 0.021454
 0.981026 0.001414 0.001414 0.016147
 0.001469 0.081481 0.875547 0.041503
 0.001469 0.121708 0.835384 0.041438
 0.974167 0.022950 0.001414 0.001469

MOTIF 3-MAGATAAV STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 2.1e-001
 0.453300 0.365985 0.179927 0.000787
 0.675584 0.000758 0.000758 0.322901
 0.000787 0.000758 0.997668 0.000787
 0.997697 0.000758 0.000758 0.000787
 0.000787 0.000758 0.000758 0.997697
 0.774042 0.000758 0.000758 0.224443
 0.997697 0.000758 0.000758 0.000787
 0.327301 0.280558 0.391354 0.000787

MOTIF 4-CTATTTCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 5.0e-001
 0.029030 0.912949 0.028991 0.029030
 0.113757 0.085399 0.028991 0.771853
 0.877358 0.000991 0.120622 0.001029
 0.012621 0.163179 0.057082 0.767118
 0.001029 0.085263 0.056992 0.856716
 0.029030 0.057082 0.000991 0.912898
 0.001029 0.996951 0.000991 0.001029
 0.029075 0.968905 0.000991 0.001029

MOTIF 5-RTKACYCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 8.3e-001
 0.394566 0.001035 0.603323 0.001076
 0.001076 0.001035 0.001035 0.996853
 0.001076 0.001035 0.633256 0.364633
 0.996853 0.001035 0.001035 0.001076
 0.030347 0.703584 0.264993 0.001076
 0.001076 0.335510 0.001035 0.662379
 0.138121 0.718355 0.001035 0.142488
 0.996853 0.001035 0.001035 0.001076

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ETV6.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ETV6/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n09.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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