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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.254 C 0.246 G 0.246 T 0.254 

MOTIF 1-AAGGTCAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 232 P= 1.3e-006
 0.953884 0.000209 0.045690 0.000217
 0.999365 0.000209 0.000209 0.000217
 0.000217 0.000209 0.999357 0.000217
 0.000217 0.000209 0.999357 0.000217
 0.007806 0.000209 0.033989 0.957996
 0.000217 0.999357 0.000209 0.000217
 0.976813 0.000209 0.022761 0.000217
 0.141698 0.675200 0.033537 0.149566

MOTIF 2-CCATTTTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 100 P= 8.2e-004
 0.000519 0.955922 0.000501 0.043059
 0.000519 0.998462 0.000501 0.000519
 0.984345 0.000501 0.014635 0.000519
 0.000519 0.045922 0.000501 0.953059
 0.000519 0.000501 0.000501 0.998480
 0.028833 0.000501 0.016350 0.954316
 0.000519 0.122588 0.000501 0.876393
 0.796538 0.057313 0.088819 0.057331

MOTIF 3-GAAACTGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 69 P= 8.5e-002
 0.070435 0.098308 0.781979 0.049278
 0.997402 0.000856 0.000856 0.000887
 0.914697 0.010856 0.073560 0.000887
 0.973245 0.000856 0.000856 0.025044
 0.025044 0.872872 0.049170 0.052915
 0.052915 0.097484 0.049170 0.800431
 0.049200 0.025013 0.924900 0.000887
 0.842226 0.010856 0.049170 0.097748

MOTIF 4-CAGATGAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 3.0e-001
 0.000772 0.997710 0.000746 0.000772
 0.955650 0.000746 0.042832 0.000772
 0.000772 0.000746 0.997710 0.000772
 0.997736 0.000746 0.000746 0.000772
 0.000772 0.000746 0.000746 0.997736
 0.277501 0.000746 0.593699 0.128055
 0.955583 0.042899 0.000746 0.000772
 0.085352 0.148796 0.765079 0.000772

MOTIF 5-AAGTGGCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.878813 0.035600 0.015451 0.070136
 0.665779 0.035600 0.244240 0.054381
 0.070136 0.001218 0.927384 0.001262
 0.011476 0.001218 0.001218 0.986087
 0.035644 0.001218 0.823682 0.139456
 0.001262 0.001218 0.996258 0.001262
 0.019787 0.977733 0.001218 0.001262
 0.209227 0.001218 0.035600 0.753955

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ESRRA.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ESRRA/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.76 seconds
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