********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.196 C 0.304 G 0.304 T 0.196 

MOTIF 1-CACGTGGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 121 P= 6.4e-002
 0.175185 0.755336 0.056464 0.013014
 0.873389 0.000556 0.000556 0.125499
 0.000357 0.933052 0.000556 0.066035
 0.213275 0.000556 0.785812 0.000357
 0.000357 0.034138 0.000556 0.964949
 0.043568 0.025870 0.838776 0.091786
 0.000357 0.000556 0.948001 0.051086
 0.145238 0.848516 0.005889 0.000357

MOTIF 2-GWTGCAWC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 5.0e-001
 0.230421 0.067953 0.701000 0.000627
 0.427626 0.000977 0.000977 0.570421
 0.000627 0.000977 0.000977 0.997420
 0.049723 0.000977 0.859539 0.089761
 0.089761 0.859539 0.000977 0.049723
 0.997420 0.000977 0.000977 0.000627
 0.570421 0.000977 0.000977 0.427626
 0.000627 0.701000 0.067953 0.230421

MOTIF 3-GCGGGACT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 7.6e-001
 0.000904 0.065606 0.887220 0.046270
 0.032952 0.883271 0.065606 0.018172
 0.086854 0.014675 0.833472 0.064999
 0.097150 0.065503 0.804344 0.033003
 0.001608 0.001408 0.996081 0.000904
 0.940685 0.033456 0.018826 0.007034
 0.032952 0.900641 0.033456 0.032952
 0.032952 0.097861 0.130220 0.738968

MOTIF 4-ATGTTCAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.915372 0.003331 0.003331 0.077966
 0.002139 0.003331 0.079158 0.915372
 0.002139 0.003331 0.992392 0.002139
 0.077966 0.079158 0.003331 0.839545
 0.002139 0.003331 0.003331 0.991199
 0.002139 0.916443 0.079280 0.002139
 0.762985 0.003331 0.003331 0.230353
 0.991199 0.003331 0.003331 0.002139

MOTIF 5-ATGGCGCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 8.8e-001
 0.994676 0.002015 0.002015 0.001294
 0.001294 0.002015 0.002015 0.994676
 0.001294 0.047884 0.903659 0.047163
 0.001294 0.002015 0.949528 0.047163
 0.001294 0.903512 0.002015 0.093179
 0.001294 0.002015 0.995398 0.001294
 0.093179 0.558477 0.208999 0.139345
 0.001294 0.745578 0.021003 0.232125

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/EP400.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_EP400/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c23n02.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	2.20 seconds
********************************************************************************