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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.275 C 0.225 G 0.225 T 0.275 

MOTIF 1-AGATAAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 184 P= 1.3e-006
 0.695861 0.038516 0.007659 0.257964
 0.000379 0.000310 0.998932 0.000379
 0.993220 0.006091 0.000310 0.000379
 0.000379 0.025378 0.000310 0.973933
 0.919438 0.000310 0.000310 0.079941
 0.871373 0.000310 0.107097 0.021220
 0.178678 0.085179 0.636774 0.099369
 0.498488 0.158926 0.216123 0.126463

MOTIF 2-AGGAARTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 61 P= 2.4e-002
 0.883568 0.000758 0.114747 0.000926
 0.000926 0.000758 0.997389 0.000926
 0.057581 0.000758 0.940735 0.000926
 0.950772 0.000758 0.047543 0.000926
 0.903685 0.094630 0.000758 0.000926
 0.629811 0.000758 0.368505 0.000926
 0.000926 0.070973 0.000758 0.927342
 0.118495 0.126056 0.715241 0.040208

MOTIF 3-TGATGMAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 1.2e-001
 0.001311 0.001074 0.001074 0.996541
 0.100615 0.001074 0.897000 0.001311
 0.996541 0.001074 0.001074 0.001311
 0.001311 0.001074 0.001074 0.996541
 0.001311 0.001074 0.996303 0.001311
 0.568660 0.311109 0.001074 0.119157
 0.996541 0.001074 0.001074 0.001311
 0.963475 0.001074 0.001074 0.034377

MOTIF 4-CCAACGGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 2.4e-001
 0.001164 0.790979 0.059716 0.148141
 0.177593 0.766626 0.000953 0.054828
 0.850047 0.147835 0.000953 0.001164
 0.967571 0.030311 0.000953 0.001164
 0.001164 0.996718 0.000953 0.001164
 0.001164 0.219369 0.778302 0.001164
 0.001164 0.059668 0.938003 0.001164
 0.189793 0.631565 0.000953 0.177688

MOTIF 5-CCACACCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 1.0e+000
 0.035852 0.885986 0.007716 0.070447
 0.105154 0.788795 0.070199 0.035852
 0.906144 0.084772 0.007716 0.001368
 0.035852 0.961661 0.001120 0.001368
 0.788653 0.001120 0.104906 0.105322
 0.001368 0.885330 0.001120 0.112182
 0.001368 0.961661 0.035604 0.001368
 0.001368 0.996145 0.001120 0.001368

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/EP300.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_EP300/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n05.farnam.hpc.yale.internal
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FINALTIME:	3.34 seconds
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