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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.253 C 0.247 G 0.247 T 0.253 

MOTIF 1-ACTTCCKG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 179 P= 8.3e-005
 0.822293 0.023230 0.117383 0.037094
 0.009782 0.961195 0.019241 0.009782
 0.002887 0.002141 0.000336 0.994636
 0.000345 0.000336 0.000336 0.998983
 0.000345 0.998975 0.000336 0.000345
 0.005430 0.983586 0.009774 0.001211
 0.000345 0.000336 0.545469 0.453850
 0.009782 0.096259 0.839363 0.054596

MOTIF 2-CGCAATTA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 2.4e-001
 0.001020 0.996965 0.000995 0.001020
 0.001020 0.000995 0.996965 0.001020
 0.001020 0.996965 0.000995 0.001020
 0.996990 0.000995 0.000995 0.001020
 0.941121 0.028930 0.000995 0.028955
 0.028955 0.028930 0.000995 0.941121
 0.029045 0.016046 0.057044 0.897865
 0.969055 0.000995 0.028930 0.001020

MOTIF 3-CTTTTGCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 2.4e-001
 0.023009 0.931536 0.022445 0.023009
 0.023009 0.022445 0.022445 0.932100
 0.023009 0.022445 0.022445 0.932100
 0.023009 0.022445 0.022445 0.932100
 0.023009 0.022445 0.022445 0.932100
 0.023009 0.022445 0.931536 0.023009
 0.023009 0.931536 0.022445 0.023009
 0.932100 0.022445 0.022445 0.023009

MOTIF 4-TAATGGCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 2.4e-001
 0.023009 0.022445 0.022445 0.932100
 0.932100 0.022445 0.022445 0.023009
 0.932100 0.022445 0.022445 0.023009
 0.023009 0.022445 0.022445 0.932100
 0.023009 0.022445 0.931536 0.023009
 0.023009 0.022445 0.931536 0.023009
 0.023009 0.931536 0.022445 0.023009
 0.932100 0.022445 0.022445 0.023009

MOTIF 5-ACCTAATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.994769 0.001729 0.001729 0.001773
 0.001773 0.994726 0.001729 0.001773
 0.001773 0.946183 0.050272 0.001773
 0.001773 0.001729 0.001729 0.994769
 0.994769 0.001729 0.001729 0.001773
 0.994769 0.001729 0.001729 0.001773
 0.001773 0.001729 0.001729 0.994769
 0.848983 0.001729 0.001729 0.147558

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/ELF4.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_ELF4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n04.farnam.hpc.yale.internal
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FINALTIME:	1.66 seconds
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