********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.243 C 0.257 G 0.257 T 0.243 

MOTIF 1-GGTGCTGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 141 P= 1.5e-006
 0.100513 0.009113 0.884207 0.006167
 0.009096 0.000325 0.984622 0.005957
 0.000309 0.000325 0.000325 0.999041
 0.071413 0.139686 0.744595 0.044305
 0.000309 0.990270 0.009113 0.000309
 0.000309 0.000325 0.000325 0.999041
 0.009096 0.000325 0.981482 0.009096
 0.948797 0.012580 0.029527 0.009096

MOTIF 2-MGCTGTCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 144 P= 4.1e-003
 0.314351 0.564265 0.000774 0.120610
 0.067237 0.038457 0.829548 0.064758
 0.000333 0.989519 0.000350 0.009798
 0.000333 0.009816 0.002161 0.987691
 0.009798 0.046549 0.943321 0.000333
 0.000333 0.019281 0.011831 0.968555
 0.000333 0.989519 0.000350 0.009798
 0.000333 0.998985 0.000350 0.000333

MOTIF 3-AACCCAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 2.4e-001
 0.992312 0.002607 0.002607 0.002475
 0.992312 0.002607 0.002607 0.002475
 0.002475 0.992444 0.002607 0.002475
 0.002475 0.780435 0.002607 0.214483
 0.002475 0.992444 0.002607 0.002475
 0.780530 0.143946 0.002607 0.072917
 0.921869 0.002607 0.002607 0.072917
 0.851200 0.002607 0.002607 0.143586

MOTIF 4-AAGTAGAR STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.832799 0.059951 0.053673 0.053576
 0.942593 0.001915 0.001915 0.053576
 0.053576 0.105598 0.839008 0.001818
 0.001818 0.001915 0.001915 0.994351
 0.994351 0.001915 0.001915 0.001818
 0.001818 0.053673 0.942690 0.001818
 0.942593 0.001915 0.053673 0.001818
 0.314886 0.053673 0.577864 0.053576

MOTIF 5-CGWTGATG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.001891 0.994226 0.001992 0.001891
 0.001891 0.001992 0.940393 0.055724
 0.562854 0.055912 0.001992 0.379242
 0.001891 0.055825 0.185950 0.756334
 0.001891 0.001992 0.994226 0.001891
 0.616947 0.163665 0.217498 0.001891
 0.001891 0.001992 0.239956 0.756161
 0.001891 0.109658 0.886559 0.001891

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/K562/fasta/RankLinear5.0_60/EHMT2.fasta --oc ../result/final_prediction/K562/inference_raw/STREME/RankLinear5.0_60_EHMT2/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c17n09.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.63 seconds
********************************************************************************